miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 5' -52.1 NC_003102.1 + 23415 0.75 0.593232
Target:  5'- cGGCCUGGCCGACUguuacgGUGCcGAAUu -3'
miRNA:   3'- -UUGGACCGGCUGAaaag--CACGaCUUA- -5'
11651 5' -52.1 NC_003102.1 + 121813 0.75 0.582482
Target:  5'- gAACCUGGCCGACUUUUCGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 67308 0.77 0.478349
Target:  5'- gAACCUGGCCGACUUUUCGauaaGCg---- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCa---CGacuua -5'
11651 5' -52.1 NC_003102.1 + 67210 0.77 0.44886
Target:  5'- gAACCUGGCCGACUUUUCGauauucauaacgUGUUGu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGC------------ACGACuua -5'
11651 5' -52.1 NC_003102.1 + 67398 0.78 0.420404
Target:  5'- gAACCUGGCCGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 121893 0.79 0.384213
Target:  5'- gAACCUGGCCGACUUUUCGUaCUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcGAcuua -5'
11651 5' -52.1 NC_003102.1 + 42895 0.79 0.366908
Target:  5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5'
11651 5' -52.1 NC_003102.1 + 26048 0.82 0.242089
Target:  5'- aAACCUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 10574 0.82 0.235972
Target:  5'- gAACCUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 97839 0.74 0.62564
Target:  5'- gAACgUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 89482 0.74 0.62564
Target:  5'- aAACCcGGCCGACUUUUCGUGg----- -3'
miRNA:   3'- -UUGGaCCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 67113 0.71 0.792663
Target:  5'- gAACCUGGCCGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 133275 0.66 0.96251
Target:  5'- cAACCUGGCCGGCUUUUagauuacGCUu--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAgca----CGAcuua -5'
11651 5' -52.1 NC_003102.1 + 36230 0.67 0.936211
Target:  5'- gAACgUGGCCGACUUUUCaUGUa---- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGcACGacuua -5'
11651 5' -52.1 NC_003102.1 + 89640 0.67 0.936211
Target:  5'- aAACCUGuCUGACUUUUCGUGUc---- -3'
miRNA:   3'- -UUGGACcGGCUGAAAAGCACGacuua -5'
11651 5' -52.1 NC_003102.1 + 54594 0.69 0.878978
Target:  5'- gAACCUGGCCGACUUUUUu--UUGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacGACUua -5'
11651 5' -52.1 NC_003102.1 + 61601 0.69 0.860233
Target:  5'- gAACCUGGCaGACUUUUCGUaaauuuuauuauaCUGAAUg -3'
miRNA:   3'- -UUGGACCGgCUGAAAAGCAc------------GACUUA- -5'
11651 5' -52.1 NC_003102.1 + 97896 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaaccuGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 97953 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 98010 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.