miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 5' -52.1 NC_003102.1 + 121813 0.75 0.582482
Target:  5'- gAACCUGGCCGACUUUUCGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 23415 0.75 0.593232
Target:  5'- cGGCCUGGCCGACUguuacgGUGCcGAAUu -3'
miRNA:   3'- -UUGGACCGGCUGAaaag--CACGaCUUA- -5'
11651 5' -52.1 NC_003102.1 + 97839 0.74 0.62564
Target:  5'- gAACgUGGCCGACUUUUCGUGa----- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 89482 0.74 0.62564
Target:  5'- aAACCcGGCCGACUUUUCGUGg----- -3'
miRNA:   3'- -UUGGaCCGGCUGAAAAGCACgacuua -5'
11651 5' -52.1 NC_003102.1 + 36211 0.74 0.636466
Target:  5'- gAACCUGGCCGACUUUUUGUa------ -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 61379 0.74 0.647288
Target:  5'- aAACCUGGCCGACUUUUUGUa------ -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 89508 0.71 0.767185
Target:  5'- gAACgUGGCUGACUUUUCGUagaaucugguggacaGUUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA---------------CGACUUa -5'
11651 5' -52.1 NC_003102.1 + 55993 0.71 0.792663
Target:  5'- gAACCUGGCCGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 67113 0.71 0.792663
Target:  5'- gAACCUGGCCGACUUUUCa-------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgacuua -5'
11651 5' -52.1 NC_003102.1 + 103598 0.71 0.802181
Target:  5'- gAACCUGGCCGACUUUUUGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 103539 0.71 0.811526
Target:  5'- aAACCUGGCCGACUUUUUGa------- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGCacgacuua -5'
11651 5' -52.1 NC_003102.1 + 98010 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 97953 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaacccGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 97896 0.7 0.855335
Target:  5'- gAACgUGGCCGACUUUUCGUacaaaccuGUcuaUGAAa -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCA--------CG---ACUUa -5'
11651 5' -52.1 NC_003102.1 + 104350 0.7 0.855335
Target:  5'- gAACCUGGCCGACUUUUUaga-UGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacgACUua -5'
11651 5' -52.1 NC_003102.1 + 61601 0.69 0.860233
Target:  5'- gAACCUGGCaGACUUUUCGUaaauuuuauuauaCUGAAUg -3'
miRNA:   3'- -UUGGACCGgCUGAAAAGCAc------------GACUUA- -5'
11651 5' -52.1 NC_003102.1 + 25836 0.69 0.863452
Target:  5'- gAACgUGGCCGACUUUUCGUa------ -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCAcgacuua -5'
11651 5' -52.1 NC_003102.1 + 54594 0.69 0.878978
Target:  5'- gAACCUGGCCGACUUUUUu--UUGAc- -3'
miRNA:   3'- -UUGGACCGGCUGAAAAGcacGACUua -5'
11651 5' -52.1 NC_003102.1 + 26362 0.68 0.900411
Target:  5'- gAACgUGGCCGACUUUUCGaGaaagaUGAc- -3'
miRNA:   3'- -UUGgACCGGCUGAAAAGCaCg----ACUua -5'
11651 5' -52.1 NC_003102.1 + 54314 0.68 0.907041
Target:  5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUGUUa--- -3'
miRNA:   3'- -UUGGACCGGCUGAAAA-----------GCACGAcuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.