Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 5' | -52.1 | NC_003102.1 | + | 89482 | 0.74 | 0.62564 |
Target: 5'- aAACCcGGCCGACUUUUCGUGg----- -3' miRNA: 3'- -UUGGaCCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76479 | 0.82 | 0.242089 |
Target: 5'- gAACCUGGCCGACUUUUCGuUGauuguaUGAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC-ACg-----ACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76352 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67398 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67308 | 0.77 | 0.478349 |
Target: 5'- gAACCUGGCCGACUUUUCGauaaGCg---- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa---CGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67210 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUUCGauauucauaacgUGUUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC------------ACGACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67113 | 0.71 | 0.792663 |
Target: 5'- gAACCUGGCCGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 61601 | 0.69 | 0.860233 |
Target: 5'- gAACCUGGCaGACUUUUCGUaaauuuuauuauaCUGAAUg -3' miRNA: 3'- -UUGGACCGgCUGAAAAGCAc------------GACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 61379 | 0.74 | 0.647288 |
Target: 5'- aAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 56085 | 0.67 | 0.946014 |
Target: 5'- gAACCUGGCCGACUUUUUa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 55993 | 0.71 | 0.792663 |
Target: 5'- gAACCUGGCCGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 54594 | 0.69 | 0.878978 |
Target: 5'- gAACCUGGCCGACUUUUUu--UUGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacGACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 54314 | 0.68 | 0.907041 |
Target: 5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUGUUa--- -3' miRNA: 3'- -UUGGACCGGCUGAAAA-----------GCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 42895 | 0.79 | 0.366908 |
Target: 5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 36230 | 0.67 | 0.936211 |
Target: 5'- gAACgUGGCCGACUUUUCaUGUa---- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGcACGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 36211 | 0.74 | 0.636466 |
Target: 5'- gAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26362 | 0.68 | 0.900411 |
Target: 5'- gAACgUGGCCGACUUUUCGaGaaagaUGAc- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCaCg----ACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26267 | 0.87 | 0.131398 |
Target: 5'- gAACCUGGCCGACUUUUCGUGUUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26190 | 0.91 | 0.067154 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26107 | 0.87 | 0.120997 |
Target: 5'- gAACCUGGCCGACUUUUUGUGCUc--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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