miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 139098 0.66 0.996476
Target:  5'- aUCACGUacGCACCGAG-GGCAUuAUCu -3'
miRNA:   3'- -AGUGCGcaUGUGGCUUgCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 135352 0.66 0.997893
Target:  5'- -aAUGCGUACACUuuGAAUGcCACGAc- -3'
miRNA:   3'- agUGCGCAUGUGG--CUUGCuGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 131646 0.66 0.997017
Target:  5'- -gGCGUGUGCGacuguggcgauCCGGACGAgACcagAGUCg -3'
miRNA:   3'- agUGCGCAUGU-----------GGCUUGCUgUG---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 131583 0.67 0.9913
Target:  5'- cCACGgGUACGCCcaauuGACGAUcgaacaguACAAUCc -3'
miRNA:   3'- aGUGCgCAUGUGGc----UUGCUG--------UGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 130138 0.68 0.983474
Target:  5'- gUCAUGCGgcgGCGCCGAAgaaGACAaauuguacaAGUCu -3'
miRNA:   3'- -AGUGCGCa--UGUGGCUUg--CUGUg--------UUAG- -5'
11653 5' -49.6 NC_003102.1 + 128736 0.68 0.990034
Target:  5'- -aGCGCGcucaacGCGCUGAACGACAUuuugguUCg -3'
miRNA:   3'- agUGCGCa-----UGUGGCUUGCUGUGuu----AG- -5'
11653 5' -49.6 NC_003102.1 + 128206 0.75 0.782918
Target:  5'- gCACGUGUACgaAUCGGggucuaaaaACGGCACGAUCa -3'
miRNA:   3'- aGUGCGCAUG--UGGCU---------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 123598 0.71 0.939914
Target:  5'- gCGCGCGcACACCGcGAUGAauuaCACAGUUg -3'
miRNA:   3'- aGUGCGCaUGUGGC-UUGCU----GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 121267 0.68 0.987072
Target:  5'- gCACgGCGUcguCGCCGAcaucaacgaGCGAC-CGAUCa -3'
miRNA:   3'- aGUG-CGCAu--GUGGCU---------UGCUGuGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 120122 0.67 0.99345
Target:  5'- aCACGC----AUCGAGCGAUACAAUg -3'
miRNA:   3'- aGUGCGcaugUGGCUUGCUGUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 117716 0.67 0.990934
Target:  5'- -aACGUcaaGUACaaaACCGAaacgcuuucauugcGCGACGCGAUCa -3'
miRNA:   3'- agUGCG---CAUG---UGGCU--------------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 117237 0.68 0.988627
Target:  5'- aCACGCGcGCGCCGcgggcuuUGACGCAc-- -3'
miRNA:   3'- aGUGCGCaUGUGGCuu-----GCUGUGUuag -5'
11653 5' -49.6 NC_003102.1 + 114367 0.69 0.981413
Target:  5'- aUCGCGCGacuacaagAUAUCGGuuagaGACGCGAUCg -3'
miRNA:   3'- -AGUGCGCa-------UGUGGCUug---CUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 113223 0.67 0.992436
Target:  5'- gCACGCGUucuugaAUCGAugGAUGCuGUCc -3'
miRNA:   3'- aGUGCGCAug----UGGCUugCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 110583 0.66 0.997931
Target:  5'- gUAUGCGUuugagucggcGCACCGAAaacuuguccgaagaaGACAgGAUCg -3'
miRNA:   3'- aGUGCGCA----------UGUGGCUUg--------------CUGUgUUAG- -5'
11653 5' -49.6 NC_003102.1 + 110197 0.66 0.995857
Target:  5'- aCA-GCGgacACGCCGu-CGACAUGAUCg -3'
miRNA:   3'- aGUgCGCa--UGUGGCuuGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 107242 0.66 0.997855
Target:  5'- aUACGUGaucggACAuuuaaucUCGAGCGGCACGAUUu -3'
miRNA:   3'- aGUGCGCa----UGU-------GGCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 106174 0.67 0.994353
Target:  5'- -aACGUGUAUuucguguagccuACCGAACauuCGCAAUCg -3'
miRNA:   3'- agUGCGCAUG------------UGGCUUGcu-GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 102288 0.67 0.995077
Target:  5'- aUCGCGC-UGCuGCCGAAUucgacgacgaaaaGACACGAUa -3'
miRNA:   3'- -AGUGCGcAUG-UGGCUUG-------------CUGUGUUAg -5'
11653 5' -49.6 NC_003102.1 + 100770 0.68 0.983474
Target:  5'- cUACGgGaggACGCgUGAugGGCGCGAUCa -3'
miRNA:   3'- aGUGCgCa--UGUG-GCUugCUGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.