miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 3' -48.7 NC_003102.1 + 26003 1.07 0.017633
Target:  5'- uAACCUGUUUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGGACAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 76449 0.85 0.344664
Target:  5'- ----aGUUUAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 104606 0.85 0.344664
Target:  5'- ----aGUUUAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97840 0.85 0.344664
Target:  5'- aGACggGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97727 0.83 0.433463
Target:  5'- aGACagGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97677 0.81 0.534195
Target:  5'- ----cGUUcACGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 137024 0.77 0.706797
Target:  5'- uAACaUGUacACGAAAAGUUGGCCACGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 112938 0.77 0.727939
Target:  5'- aGACUacaaaGUUUACGAAAAGUUGGCCAgGu -3'
miRNA:   3'- -UUGGa----CAAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 67231 0.77 0.748706
Target:  5'- uGACUUa-UUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 137325 0.76 0.788762
Target:  5'- ----cGgcUAUGAAAAGUCGGCCGCGu -3'
miRNA:   3'- uuggaCaaAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 137401 0.76 0.788762
Target:  5'- ----cGgcUAUGAAAAGUCGGCCGCGu -3'
miRNA:   3'- uuggaCaaAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 36066 0.76 0.788762
Target:  5'- ---aUGUacAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggACAaaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 10409 0.75 0.798403
Target:  5'- uGGCCUc---ACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 132240 0.75 0.817165
Target:  5'- uAACaaGUUUAUGAacauguuuuuaaAAAGUCGGCCGCGu -3'
miRNA:   3'- -UUGgaCAAAUGCU------------UUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 104683 0.75 0.817165
Target:  5'- aAACaUGUcaACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 89602 0.75 0.826266
Target:  5'- ----aGUUUACGAAAAGUCGGaCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 112736 0.75 0.826266
Target:  5'- uAACaUGUcaACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 26528 0.75 0.835167
Target:  5'- cAUCUuucu-CGAAAAGUCGGCCACGu -3'
miRNA:   3'- uUGGAcaaauGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 25788 0.75 0.835167
Target:  5'- uGACUuuUGUUUgaguauugaucACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGG--ACAAA-----------UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 76513 0.74 0.852333
Target:  5'- -----aUUUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggacAAAUGCUUUUCAGCCGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.