miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 26114 1.09 0.01647
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 10581 1 0.054759
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26197 1 0.054759
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 36206 1 0.058021
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 42900 1 0.058021
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 104344 0.99 0.067019
Target:  5'- cGAAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 67404 0.99 0.068974
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 104631 0.99 0.068974
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 103593 0.97 0.084271
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 67314 0.96 0.09991
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 67216 0.95 0.108722
Target:  5'- uGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 67119 0.95 0.111818
Target:  5'- uGAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 61373 0.95 0.114997
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 56080 0.92 0.160247
Target:  5'- -aGAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 25973 0.92 0.16467
Target:  5'- -aGAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10738 0.91 0.183471
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26272 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103475 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 121898 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.