Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11655 | 3' | -47.7 | NC_003102.1 | + | 112647 | 0.72 | 0.964288 |
Target: 5'- cGAuUCGAACCUGuCUGACUUUUcGUg -3' miRNA: 3'- uCUuAGCUUGGACcGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 23423 | 0.73 | 0.943369 |
Target: 5'- -cAAUCGcccGGCCUGGCCGACUguuacgGUg -3' miRNA: 3'- ucUUAGC---UUGGACCGGCUGAaaaa--CA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 112610 | 0.73 | 0.933141 |
Target: 5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3' miRNA: 3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 42592 | 0.73 | 0.933141 |
Target: 5'- uGAAUUGAACUUGuCCGACUUUUUa- -3' miRNA: 3'- uCUUAGCUUGGACcGGCUGAAAAAca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 76617 | 0.75 | 0.881357 |
Target: 5'- cGAuUUGAACgUGGCCGACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGgACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 104774 | 0.75 | 0.881357 |
Target: 5'- cGAuUUGAACgUGGCCGACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGgACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 25830 | 0.75 | 0.873698 |
Target: 5'- -cGAUCuGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAG-CUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 137233 | 0.75 | 0.857645 |
Target: 5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3' miRNA: 3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 137156 | 0.75 | 0.857645 |
Target: 5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3' miRNA: 3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 10655 | 0.79 | 0.691158 |
Target: 5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 42591 | 0.8 | 0.614732 |
Target: 5'- -uAAUCGAACCUGGCCGACcgcaaacUUGUg -3' miRNA: 3'- ucUUAGCUUGGACCGGCUGaaa----AACA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 26053 | 0.8 | 0.647592 |
Target: 5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97901 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 103652 | 0.83 | 0.497094 |
Target: 5'- -aAAUCGAACCUGGCCGACUc----- -3' miRNA: 3'- ucUUAGCUUGGACCGGCUGAaaaaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97844 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97958 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 98015 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 112466 | 0.84 | 0.446917 |
Target: 5'- cGAuUCGAACCUGGCUGACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGGACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 103534 | 0.85 | 0.399686 |
Target: 5'- -aAAUCaAACCUGGCCGACUUUUUGa -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAACa -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 10821 | 0.86 | 0.364275 |
Target: 5'- uGAAUCuAACCUGGCCGACUUUUcGUg -3' miRNA: 3'- uCUUAGcUUGGACCGGCUGAAAAaCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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