miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 42592 0.73 0.933141
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 42900 1 0.058021
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 54310 0.69 0.991468
Target:  5'- -aAAUC-AACUUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 54599 0.9 0.209621
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUu- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 54794 0.87 0.323154
Target:  5'- -uAAUCGAACCUGGCUGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 55988 0.88 0.264762
Target:  5'- -aAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 56080 0.92 0.160247
Target:  5'- -aGAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 61373 0.95 0.114997
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 61607 0.86 0.355768
Target:  5'- cGAAUCGAACCUGGCaGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGgCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 66062 0.66 0.999534
Target:  5'- gAGAAUCGGAUCaaguacaagGGCUGGCUg---GUa -3'
miRNA:   3'- -UCUUAGCUUGGa--------CCGGCUGAaaaaCA- -5'
11655 3' -47.7 NC_003102.1 + 67119 0.95 0.111818
Target:  5'- uGAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 67169 0.67 0.998654
Target:  5'- cGAuUCGAACgUGuCUGACUUUUUGc -3'
miRNA:   3'- uCUuAGCUUGgACcGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 67216 0.95 0.108722
Target:  5'- uGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 67259 0.67 0.998654
Target:  5'- cGAuUCGAACgUGuCUGACUUUUUGc -3'
miRNA:   3'- uCUuAGCUUGgACcGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 67314 0.96 0.09991
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 67404 0.99 0.068974
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 67456 0.69 0.993631
Target:  5'- uGAuAUCuAAUCUGGCCGACUUUa--- -3'
miRNA:   3'- uCU-UAGcUUGGACCGGCUGAAAaaca -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76474 0.9 0.215222
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76617 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.