miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 103652 0.83 0.497094
Target:  5'- -aAAUCGAACCUGGCCGACUc----- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAaaaaca -5'
11655 3' -47.7 NC_003102.1 + 103593 0.97 0.084271
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 103534 0.85 0.399686
Target:  5'- -aAAUCaAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 103475 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 98015 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97958 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97901 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97844 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 96504 0.69 0.991468
Target:  5'- cGAuUCuAACCUGGCCGACa------ -3'
miRNA:   3'- uCUuAGcUUGGACCGGCUGaaaaaca -5'
11655 3' -47.7 NC_003102.1 + 89505 0.7 0.987179
Target:  5'- ---uUUGAACgUGGCUGACUUUUcGUa -3'
miRNA:   3'- ucuuAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89487 0.7 0.988761
Target:  5'- -aAAUCaAACCcGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGaCCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89397 0.67 0.998366
Target:  5'- -aAAUCaAACUUGGCUGACUUUUg-- -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 76617 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 76474 0.9 0.215222
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 67456 0.69 0.993631
Target:  5'- uGAuAUCuAAUCUGGCCGACUUUa--- -3'
miRNA:   3'- uCU-UAGcUUGGACCGGCUGAAAaaca -5'
11655 3' -47.7 NC_003102.1 + 67404 0.99 0.068974
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 67314 0.96 0.09991
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 67259 0.67 0.998654
Target:  5'- cGAuUCGAACgUGuCUGACUUUUUGc -3'
miRNA:   3'- uCUuAGCUUGgACcGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 67216 0.95 0.108722
Target:  5'- uGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.