miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 137233 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 137197 0.71 0.979087
Target:  5'- -aAAUCGAACgUGGCCaACUUUUcgUGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGcUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 137156 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 133282 0.72 0.960619
Target:  5'- uGGGAcacAACCUGGCCGGCUUUUa-- -3'
miRNA:   3'- -UCUUagcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 121962 0.72 0.952519
Target:  5'- cGAuUUGAACgUGGCCGACUUg---- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAaaaca -5'
11655 3' -47.7 NC_003102.1 + 121898 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 121819 0.89 0.258096
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 121675 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112791 0.7 0.985431
Target:  5'- cGAAUCGAACgUGuCUGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 112762 0.67 0.998366
Target:  5'- -cAAUUGAACCUGGCa-ACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGgcUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112707 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112647 0.72 0.964288
Target:  5'- cGAuUCGAACCUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112610 0.73 0.933141
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112563 0.9 0.215222
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112466 0.84 0.446917
Target:  5'- cGAuUCGAACCUGGCUGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 107301 0.68 0.996641
Target:  5'- aAGcGUCGGGCgaGGCCGACg------ -3'
miRNA:   3'- -UCuUAGCUUGgaCCGGCUGaaaaaca -5'
11655 3' -47.7 NC_003102.1 + 104774 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 104631 0.99 0.068974
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 104510 0.88 0.292823
Target:  5'- cGuuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCuuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 104344 0.99 0.067019
Target:  5'- cGAAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.