miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 103593 0.97 0.084271
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 61373 0.95 0.114997
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 56080 0.92 0.160247
Target:  5'- -aGAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103475 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103534 0.85 0.399686
Target:  5'- -aAAUCaAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 26356 0.87 0.323154
Target:  5'- cGAAUCGAACgUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 104510 0.88 0.292823
Target:  5'- cGuuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCuuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 55988 0.88 0.264762
Target:  5'- -aAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 112563 0.9 0.215222
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76474 0.9 0.215222
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26501 0.72 0.952519
Target:  5'- cGAuUCGAACCUGGCUaACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGcUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 133282 0.72 0.960619
Target:  5'- uGGGAcacAACCUGGCCGGCUUUUa-- -3'
miRNA:   3'- -UCUUagcUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 137197 0.71 0.979087
Target:  5'- -aAAUCGAACgUGGCCaACUUUUcgUGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGcUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 112791 0.7 0.985431
Target:  5'- cGAAUCGAACgUGuCUGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 112707 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 89487 0.7 0.988761
Target:  5'- -aAAUCaAACCcGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGaCCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 96504 0.69 0.991468
Target:  5'- cGAuUCuAACCUGGCCGACa------ -3'
miRNA:   3'- uCUuAGcUUGGACCGGCUGaaaaaca -5'
11655 3' -47.7 NC_003102.1 + 67456 0.69 0.993631
Target:  5'- uGAuAUCuAAUCUGGCCGACUUUa--- -3'
miRNA:   3'- uCU-UAGcUUGGACCGGCUGAAAaaca -5'
11655 3' -47.7 NC_003102.1 + 26114 1.09 0.01647
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.