miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 36236 0.86 0.355768
Target:  5'- cGAAUUGAACgUGGCCGACUUUUcaUGUa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 10821 0.86 0.364275
Target:  5'- uGAAUCuAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26053 0.8 0.647592
Target:  5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76617 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 67216 0.95 0.108722
Target:  5'- uGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 26717 0.9 0.226809
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 97901 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 42592 0.73 0.933141
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 121819 0.89 0.258096
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 112610 0.73 0.933141
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 98015 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 61607 0.86 0.355768
Target:  5'- cGAAUCGAACCUGGCaGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGGACCGgCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97958 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97844 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10655 0.79 0.691158
Target:  5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 104774 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 42900 1 0.058021
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 67314 0.96 0.09991
Target:  5'- cGAAUCGAACCUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 121898 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 54599 0.9 0.209621
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUu- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.