Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11655 | 3' | -47.7 | NC_003102.1 | + | 89397 | 0.67 | 0.998366 |
Target: 5'- -aAAUCaAACUUGGCUGACUUUUg-- -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97844 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97901 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 26114 | 1.09 | 0.01647 |
Target: 5'- uAGAAUCGAACCUGGCCGACUUUUUGUg -3' miRNA: 3'- -UCUUAGCUUGGACCGGCUGAAAAACA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 112707 | 0.7 | 0.987179 |
Target: 5'- cGAAUCGAACgUGuCUGACUUUUcGUg -3' miRNA: 3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 112791 | 0.7 | 0.985431 |
Target: 5'- cGAAUCGAACgUGuCUGACUUUUUa- -3' miRNA: 3'- uCUUAGCUUGgACcGGCUGAAAAAca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 133282 | 0.72 | 0.960619 |
Target: 5'- uGGGAcacAACCUGGCCGGCUUUUa-- -3' miRNA: 3'- -UCUUagcUUGGACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 26501 | 0.72 | 0.952519 |
Target: 5'- cGAuUCGAACCUGGCUaACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGGACCGGcUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 112610 | 0.73 | 0.933141 |
Target: 5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3' miRNA: 3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 26053 | 0.8 | 0.647592 |
Target: 5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 76617 | 0.75 | 0.881357 |
Target: 5'- cGAuUUGAACgUGGCCGACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGgACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 23423 | 0.73 | 0.943369 |
Target: 5'- -cAAUCGcccGGCCUGGCCGACUguuacgGUg -3' miRNA: 3'- ucUUAGC---UUGGACCGGCUGAaaaa--CA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 67456 | 0.69 | 0.993631 |
Target: 5'- uGAuAUCuAAUCUGGCCGACUUUa--- -3' miRNA: 3'- uCU-UAGcUUGGACCGGCUGAAAaaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 104774 | 0.75 | 0.881357 |
Target: 5'- cGAuUUGAACgUGGCCGACUUUUc-- -3' miRNA: 3'- uCUuAGCUUGgACCGGCUGAAAAaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 96504 | 0.69 | 0.991468 |
Target: 5'- cGAuUCuAACCUGGCCGACa------ -3' miRNA: 3'- uCUuAGcUUGGACCGGCUGaaaaaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 121962 | 0.72 | 0.952519 |
Target: 5'- cGAuUUGAACgUGGCCGACUUg---- -3' miRNA: 3'- uCUuAGCUUGgACCGGCUGAAaaaca -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 10655 | 0.79 | 0.691158 |
Target: 5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 97958 | 0.83 | 0.497094 |
Target: 5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 89487 | 0.7 | 0.988761 |
Target: 5'- -aAAUCaAACCcGGCCGACUUUUcGUg -3' miRNA: 3'- ucUUAGcUUGGaCCGGCUGAAAAaCA- -5' |
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11655 | 3' | -47.7 | NC_003102.1 | + | 137197 | 0.71 | 0.979087 |
Target: 5'- -aAAUCGAACgUGGCCaACUUUUcgUGUa -3' miRNA: 3'- ucUUAGCUUGgACCGGcUGAAAA--ACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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