miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 61629 0.75 0.983927
Target:  5'- aUugAAAcAAGUCAGACGCGUUCGa-- -3'
miRNA:   3'- gAugUUU-UUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61764 0.67 0.999995
Target:  5'- uUugAuucGGUCAGACuacgaaaACGUUCAGAg -3'
miRNA:   3'- gAugUuuuUCAGUCUG-------UGCAAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 67139 0.82 0.775372
Target:  5'- -aACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 67237 0.86 0.59821
Target:  5'- uUGCAAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 67238 0.7 0.999525
Target:  5'- uUACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67335 0.91 0.361535
Target:  5'- uUGCAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67425 0.91 0.361535
Target:  5'- uUGCAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76328 0.8 0.869004
Target:  5'- ---aGAAAAGUCAGACGCGUUCAa-- -3'
miRNA:   3'- gaugUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76452 0.74 0.987641
Target:  5'- uUAUGAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76511 0.7 0.999525
Target:  5'- uUACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76637 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89414 0.83 0.721955
Target:  5'- -cAUGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89420 0.85 0.64353
Target:  5'- uCUAUGAAAAGUCAGACAUGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89482 0.76 0.971002
Target:  5'- -cACGAAAAGUCAGACAgGUUUAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89508 0.81 0.824866
Target:  5'- -gACAAAAAGUUGGACGCGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89599 0.9 0.388701
Target:  5'- uUACGAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89668 0.84 0.677439
Target:  5'- uCUACGAAAAGUCAGcCACGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 96426 0.68 0.99997
Target:  5'- -gGCGAuuccAAAGUgAGACGCGUUCGa-- -3'
miRNA:   3'- gaUGUU----UUUCAgUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97681 0.75 0.976849
Target:  5'- -cACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97737 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.