miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 36068 0.72 0.996967
Target:  5'- gUACAugAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGU--UUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36184 0.82 0.795725
Target:  5'- uUGCuAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36257 0.79 0.913327
Target:  5'- uUAUAAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36371 0.71 0.999067
Target:  5'- uUACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 42427 0.74 0.990654
Target:  5'- uUAUAAAAAGUCGGACAaGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 42570 0.66 0.999998
Target:  5'- -cACGAAAAGUCAGACAaGUUg---- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 42737 0.68 0.99997
Target:  5'- -cACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 42920 0.82 0.764953
Target:  5'- --uCGAAAAGUCAGACGCGUUCAa-- -3'
miRNA:   3'- gauGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 47270 0.7 0.999454
Target:  5'- -cGCGAAAuAGUCAGGCGCGUUUuuaaauauaacaaauGGGUg -3'
miRNA:   3'- gaUGUUUU-UCAGUCUGUGCAAG---------------UCUA- -5'
11655 5' -43.9 NC_003102.1 + 54289 0.81 0.843236
Target:  5'- aUGC-AAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54621 0.82 0.795725
Target:  5'- uUGCuAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54958 0.71 0.998846
Target:  5'- uUACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gAUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 54989 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55021 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55053 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55947 0.67 0.999985
Target:  5'- -aGCGAAAcGUCAGACAaGUUCAa-- -3'
miRNA:   3'- gaUGUUUUuCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 55966 0.92 0.327417
Target:  5'- uUACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 56058 1.03 0.08634
Target:  5'- uUACGAAAAGUCAGACACGUUCAGAUc -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 61355 0.79 0.892424
Target:  5'- ---aGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaugUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61538 0.66 0.999999
Target:  5'- uUACAAAAAGUCGGcCAgGUUU-GAUu -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGuCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.