miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 104794 0.68 0.99997
Target:  5'- -aACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104674 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104609 0.74 0.987641
Target:  5'- uUAUGAAAAGUCGGcCACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104490 0.78 0.925813
Target:  5'- -cACGAAAAGUCuGACACGUUCGu-- -3'
miRNA:   3'- gaUGUUUUUCAGuCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104324 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104260 0.66 0.999998
Target:  5'- aUGCAAAAAGUCAGACAgcUUU-GAUu -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgcAAGuCUA- -5'
11655 5' -43.9 NC_003102.1 + 103817 0.67 0.999985
Target:  5'- uCUAUGAAGAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103638 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103631 0.87 0.564504
Target:  5'- -cACGAAAAGUCGGACGCGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103572 0.85 0.654859
Target:  5'- -cGCGAAAAGUCAGACACGUUUAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103513 0.9 0.417172
Target:  5'- -cGCGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103455 0.74 0.991926
Target:  5'- --uCGAAAAGUCAGACACGUUa---- -3'
miRNA:   3'- gauGUUUUUCAGUCUGUGCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 98036 0.71 0.998583
Target:  5'- -cAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97981 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97924 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97867 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 97850 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97737 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97681 0.75 0.976849
Target:  5'- -cACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 96426 0.68 0.99997
Target:  5'- -gGCGAuuccAAAGUgAGACGCGUUCGa-- -3'
miRNA:   3'- gaUGUU----UUUCAgUCUGUGCAAGUcua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.