miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 137399 0.75 0.983927
Target:  5'- gCUAUGAAAAGUCGGcCGCGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137323 0.75 0.983927
Target:  5'- gCUAUGAAAAGUCGGcCGCGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137290 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137219 0.67 0.999985
Target:  5'- uUAUGAAAAGUCcGACAgGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGuCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137213 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137136 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137033 0.69 0.999867
Target:  5'- -cACGAAAAGUUGGcCACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 133388 0.72 0.997471
Target:  5'- aUGCAAGuuGGUCAGcgauuuaugaACAUGUUCAGAa -3'
miRNA:   3'- gAUGUUUu-UCAGUC----------UGUGCAAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 132034 0.66 0.999998
Target:  5'- -aACGAAAAGUCAGACAaGUUa---- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAgucua -5'
11655 5' -43.9 NC_003102.1 + 121920 0.72 0.996967
Target:  5'- uUAUGAAAAGUCAaACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUcUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 121841 0.94 0.259568
Target:  5'- aCUACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 121734 0.7 0.999708
Target:  5'- gUACGAAAAGUCGGcCAgGUUCGu-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 114375 0.66 0.999999
Target:  5'- aCUACAAGAuaucGGUUagAGACGCGaUCgAGAUg -3'
miRNA:   3'- -GAUGUUUU----UCAG--UCUGUGCaAG-UCUA- -5'
11655 5' -43.9 NC_003102.1 + 113129 0.69 0.999925
Target:  5'- gUACaAGAGAGUCAGAaACGUcgCGGAc -3'
miRNA:   3'- gAUG-UUUUUCAGUCUgUGCAa-GUCUa -5'
11655 5' -43.9 NC_003102.1 + 112811 0.79 0.892424
Target:  5'- -cACGAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112727 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112631 0.66 0.999998
Target:  5'- uUAUGAAAAGUCAGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112625 0.9 0.388701
Target:  5'- aCUAUAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112543 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112446 0.77 0.94727
Target:  5'- -aACuAAAAGUCGGACACGUUCGa-- -3'
miRNA:   3'- gaUGuUUUUCAGUCUGUGCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.