miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 10415 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10500 0.7 0.999626
Target:  5'- uUACGAcAAGUCAGACGUGUUCGc-- -3'
miRNA:   3'- gAUGUUuUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10574 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10601 0.77 0.942342
Target:  5'- aUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 10678 0.95 0.239647
Target:  5'- uCUACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10760 0.94 0.259568
Target:  5'- aCUACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10906 0.71 0.998271
Target:  5'- -cACAAAAAGUCAuACAUGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUcUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 25810 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 25948 0.68 0.999959
Target:  5'- -gACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 25995 0.91 0.370442
Target:  5'- uUACGAAAAGUCGGcCACGUUCAGAUc -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 26031 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26076 1.06 0.055276
Target:  5'- uCUACAAAAAGUCAGACACGUUCAGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 26108 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26135 0.81 0.834164
Target:  5'- aCUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 26218 0.81 0.834164
Target:  5'- aCUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 26293 0.89 0.44688
Target:  5'- -aACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26352 0.89 0.44688
Target:  5'- -aACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26522 0.7 0.999626
Target:  5'- uCU-CGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- -GAuGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26554 0.68 0.99997
Target:  5'- --cUAAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gauGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26737 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.