miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 103572 0.85 0.654859
Target:  5'- -cGCGAAAAGUCAGACACGUUUAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89668 0.84 0.677439
Target:  5'- uCUACGAAAAGUCAGcCACGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89414 0.83 0.721955
Target:  5'- -cAUGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 42920 0.82 0.764953
Target:  5'- --uCGAAAAGUCAGACGCGUUCAa-- -3'
miRNA:   3'- gauGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67139 0.82 0.775372
Target:  5'- -aACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137136 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137213 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 137290 0.82 0.775372
Target:  5'- -cACGAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 36184 0.82 0.795725
Target:  5'- uUGCuAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54621 0.82 0.795725
Target:  5'- uUGCuAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89508 0.81 0.824866
Target:  5'- -gACAAAAAGUUGGACGCGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26218 0.81 0.834164
Target:  5'- aCUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 26135 0.81 0.834164
Target:  5'- aCUACGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgcaAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 54289 0.81 0.843236
Target:  5'- aUGC-AAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76328 0.8 0.869004
Target:  5'- ---aGAAAAGUCAGACGCGUUCAa-- -3'
miRNA:   3'- gaugUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112811 0.79 0.892424
Target:  5'- -cACGAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61355 0.79 0.892424
Target:  5'- ---aGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaugUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36257 0.79 0.913327
Target:  5'- uUAUAAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97850 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97737 0.78 0.919716
Target:  5'- gUACGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.