Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11655 | 5' | -43.9 | NC_003102.1 | + | 89482 | 0.76 | 0.971002 |
Target: 5'- -cACGAAAAGUCAGACAgGUUUAa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 112446 | 0.77 | 0.94727 |
Target: 5'- -aACuAAAAGUCGGACACGUUCGa-- -3' miRNA: 3'- gaUGuUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 89414 | 0.83 | 0.721955 |
Target: 5'- -cAUGAAAAGUCAGACACGUUCAa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 103572 | 0.85 | 0.654859 |
Target: 5'- -cGCGAAAAGUCAGACACGUUUAa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 103631 | 0.87 | 0.564504 |
Target: 5'- -cACGAAAAGUCGGACGCGUUCAa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 112543 | 0.87 | 0.520409 |
Target: 5'- -cACGAAAAGUCAGACACGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 104324 | 0.87 | 0.520409 |
Target: 5'- -cACGAAAAGUCAGACACGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 103513 | 0.9 | 0.417172 |
Target: 5'- -cGCGAAAAGUCAGACACGUUCAa-- -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 112625 | 0.9 | 0.388701 |
Target: 5'- aCUAUAAAAAGUCAGACACGUUCGa-- -3' miRNA: 3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 55966 | 0.92 | 0.327417 |
Target: 5'- uUACGAAAAGUCAGACACGUUCAa-- -3' miRNA: 3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 137136 | 0.82 | 0.775372 |
Target: 5'- -cACGAAAAGUCAGACACGUUU-GAa -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 137213 | 0.82 | 0.775372 |
Target: 5'- -cACGAAAAGUCAGACACGUUU-GAa -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 104490 | 0.78 | 0.925813 |
Target: 5'- -cACGAAAAGUCuGACACGUUCGu-- -3' miRNA: 3'- gaUGUUUUUCAGuCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 97850 | 0.78 | 0.919716 |
Target: 5'- gUACGAAAAGUCGGcCACGUUCGa-- -3' miRNA: 3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 97737 | 0.78 | 0.919716 |
Target: 5'- gUACGAAAAGUCGGcCACGUUCGa-- -3' miRNA: 3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 61355 | 0.79 | 0.892424 |
Target: 5'- ---aGAAAAGUCAGACACGUUCGa-- -3' miRNA: 3'- gaugUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 76328 | 0.8 | 0.869004 |
Target: 5'- ---aGAAAAGUCAGACGCGUUCAa-- -3' miRNA: 3'- gaugUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 54289 | 0.81 | 0.843236 |
Target: 5'- aUGC-AAAAGUCGGACACGUUCAa-- -3' miRNA: 3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 36184 | 0.82 | 0.795725 |
Target: 5'- uUGCuAAAAGUCGGACACGUUCAa-- -3' miRNA: 3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 137290 | 0.82 | 0.775372 |
Target: 5'- -cACGAAAAGUCAGACACGUUU-GAa -3' miRNA: 3'- gaUGUUUUUCAGUCUGUGCAAGuCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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