Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11655 | 5' | -43.9 | NC_003102.1 | + | 97737 | 0.78 | 0.919716 |
Target: 5'- gUACGAAAAGUCGGcCACGUUCGa-- -3' miRNA: 3'- gAUGUUUUUCAGUCuGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 61355 | 0.79 | 0.892424 |
Target: 5'- ---aGAAAAGUCAGACACGUUCGa-- -3' miRNA: 3'- gaugUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 76328 | 0.8 | 0.869004 |
Target: 5'- ---aGAAAAGUCAGACGCGUUCAa-- -3' miRNA: 3'- gaugUUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 54289 | 0.81 | 0.843236 |
Target: 5'- aUGC-AAAAGUCGGACACGUUCAa-- -3' miRNA: 3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 36184 | 0.82 | 0.795725 |
Target: 5'- uUGCuAAAAGUCGGACACGUUCAa-- -3' miRNA: 3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 103817 | 0.67 | 0.999985 |
Target: 5'- uCUAUGAAGAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- -GAUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 104794 | 0.68 | 0.99997 |
Target: 5'- -aACAAAAAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 54989 | 0.68 | 0.999959 |
Target: 5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3' miRNA: 3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 55021 | 0.68 | 0.999959 |
Target: 5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3' miRNA: 3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 55053 | 0.68 | 0.999959 |
Target: 5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3' miRNA: 3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 26522 | 0.7 | 0.999626 |
Target: 5'- uCU-CGAAAAGUCGGcCACGUUCGa-- -3' miRNA: 3'- -GAuGUUUUUCAGUCuGUGCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 137219 | 0.67 | 0.999985 |
Target: 5'- uUAUGAAAAGUCcGACAgGUUCAa-- -3' miRNA: 3'- gAUGUUUUUCAGuCUGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 55947 | 0.67 | 0.999985 |
Target: 5'- -aGCGAAAcGUCAGACAaGUUCAa-- -3' miRNA: 3'- gaUGUUUUuCAGUCUGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 112727 | 0.67 | 0.999989 |
Target: 5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 103638 | 0.67 | 0.999989 |
Target: 5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 104674 | 0.67 | 0.999989 |
Target: 5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 76637 | 0.67 | 0.999989 |
Target: 5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3' miRNA: 3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 61764 | 0.67 | 0.999995 |
Target: 5'- uUugAuucGGUCAGACuacgaaaACGUUCAGAg -3' miRNA: 3'- gAugUuuuUCAGUCUG-------UGCAAGUCUa -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 112631 | 0.66 | 0.999998 |
Target: 5'- uUAUGAAAAGUCAGcCAgGUUCGa-- -3' miRNA: 3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5' |
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11655 | 5' | -43.9 | NC_003102.1 | + | 26076 | 1.06 | 0.055276 |
Target: 5'- uCUACAAAAAGUCAGACACGUUCAGAUc -3' miRNA: 3'- -GAUGUUUUUCAGUCUGUGCAAGUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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