miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 121920 0.72 0.996967
Target:  5'- uUAUGAAAAGUCAaACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUcUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 98036 0.71 0.998583
Target:  5'- -cAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 104794 0.68 0.99997
Target:  5'- -aACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76637 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89508 0.81 0.824866
Target:  5'- -gACAAAAAGUUGGACGCGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97924 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 36371 0.71 0.999067
Target:  5'- uUACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61764 0.67 0.999995
Target:  5'- uUugAuucGGUCAGACuacgaaaACGUUCAGAg -3'
miRNA:   3'- gAugUuuuUCAGUCUG-------UGCAAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 97867 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 112631 0.66 0.999998
Target:  5'- uUAUGAAAAGUCAGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54958 0.71 0.998846
Target:  5'- uUACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gAUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 61629 0.75 0.983927
Target:  5'- aUugAAAcAAGUCAGACGCGUUCGa-- -3'
miRNA:   3'- gAugUUU-UUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26522 0.7 0.999626
Target:  5'- uCU-CGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- -GAuGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54989 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55947 0.67 0.999985
Target:  5'- -aGCGAAAcGUCAGACAaGUUCAa-- -3'
miRNA:   3'- gaUGUUUUuCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104674 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89668 0.84 0.677439
Target:  5'- uCUACGAAAAGUCAGcCACGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54621 0.82 0.795725
Target:  5'- uUGCuAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGuUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 36257 0.79 0.913327
Target:  5'- uUAUAAAAAGUCAGACAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 97981 0.77 0.951911
Target:  5'- uCUAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUgCAAguCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.