miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 61538 0.66 0.999999
Target:  5'- uUACAAAAAGUCGGcCAgGUUU-GAUu -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGuCUA- -5'
11655 5' -43.9 NC_003102.1 + 36371 0.71 0.999067
Target:  5'- uUACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 98036 0.71 0.998583
Target:  5'- -cAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 26076 1.06 0.055276
Target:  5'- uCUACAAAAAGUCAGACACGUUCAGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 104674 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103638 0.67 0.999989
Target:  5'- -cACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 55947 0.67 0.999985
Target:  5'- -aGCGAAAcGUCAGACAaGUUCAa-- -3'
miRNA:   3'- gaUGUUUUuCAGUCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 137219 0.67 0.999985
Target:  5'- uUAUGAAAAGUCcGACAgGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGuCUGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54989 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 76511 0.7 0.999525
Target:  5'- uUACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 55053 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 104794 0.68 0.99997
Target:  5'- -aACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112631 0.66 0.999998
Target:  5'- uUAUGAAAAGUCAGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26522 0.7 0.999626
Target:  5'- uCU-CGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- -GAuGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 61764 0.67 0.999995
Target:  5'- uUugAuucGGUCAGACuacgaaaACGUUCAGAg -3'
miRNA:   3'- gAugUuuuUCAGUCUG-------UGCAAGUCUa -5'
11655 5' -43.9 NC_003102.1 + 103817 0.67 0.999985
Target:  5'- uCUAUGAAGAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10500 0.7 0.999626
Target:  5'- uUACGAcAAGUCAGACGUGUUCGc-- -3'
miRNA:   3'- gAUGUUuUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54958 0.71 0.998846
Target:  5'- uUACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gAUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 76637 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112727 0.67 0.999989
Target:  5'- -aACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.