miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11659 5' -59.1 NC_003102.1 + 63242 0.66 0.756914
Target:  5'- uCUgGACCG-UGCCGCCGCcgAGaUCGUg- -3'
miRNA:   3'- -GAgUUGGCaACGGCGGCG--UC-GGCGuc -5'
11659 5' -59.1 NC_003102.1 + 50496 0.66 0.756914
Target:  5'- --aGACCGUUGUCGuuGCaaacGGUCGCu- -3'
miRNA:   3'- gagUUGGCAACGGCggCG----UCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 111406 0.66 0.745477
Target:  5'- uUUAGCgGUggcgaugaugacGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gAGUUGgCAa-----------CGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 45006 0.66 0.728063
Target:  5'- -aCAGCCGcUUGCC-UUGCAGCUGUAu -3'
miRNA:   3'- gaGUUGGC-AACGGcGGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 3736 0.67 0.708409
Target:  5'- aUCGGCgGUgGCUGCUGCuGCUGCu- -3'
miRNA:   3'- gAGUUGgCAaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 81550 0.67 0.708409
Target:  5'- gUCGACgCGgucGCCGUCGCAGacgaCGCGu -3'
miRNA:   3'- gAGUUG-GCaa-CGGCGGCGUCg---GCGUc -5'
11659 5' -59.1 NC_003102.1 + 78049 0.67 0.698482
Target:  5'- -aUAAUCGUacgGCCGCCGCGGagauaUGCAa -3'
miRNA:   3'- gaGUUGGCAa--CGGCGGCGUCg----GCGUc -5'
11659 5' -59.1 NC_003102.1 + 16620 0.67 0.688501
Target:  5'- uUUGACCuGUUggaccGCCGCCGCGaCUGCGGa -3'
miRNA:   3'- gAGUUGG-CAA-----CGGCGGCGUcGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 58657 0.67 0.688501
Target:  5'- gUCGA-CGUcGCCGUCGCAGUCgGCAu -3'
miRNA:   3'- gAGUUgGCAaCGGCGGCGUCGG-CGUc -5'
11659 5' -59.1 NC_003102.1 + 20627 0.67 0.668409
Target:  5'- -cCAACuCGUcGUCGUCGUAGUCGCGa -3'
miRNA:   3'- gaGUUG-GCAaCGGCGGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 80530 0.67 0.667401
Target:  5'- aUC-ACCGUUGCgaCGCCaacaugagcagcaGCAGCgGCAGc -3'
miRNA:   3'- gAGuUGGCAACG--GCGG-------------CGUCGgCGUC- -5'
11659 5' -59.1 NC_003102.1 + 92959 0.68 0.658316
Target:  5'- cCUCuACUGUUGCUGaCGCcGCCGCc- -3'
miRNA:   3'- -GAGuUGGCAACGGCgGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 34968 0.68 0.65225
Target:  5'- gCUCAAUUGUUGuCCGagaguguaaugauccUCGUAGCCGCGu -3'
miRNA:   3'- -GAGUUGGCAAC-GGC---------------GGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 16436 0.68 0.648202
Target:  5'- aUC-GCCGcgauuCUGCCGCAGUCGCGGc -3'
miRNA:   3'- gAGuUGGCaac--GGCGGCGUCGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 60362 0.68 0.617818
Target:  5'- aUC-GCCGccGCCGCCGCcGCUGCc- -3'
miRNA:   3'- gAGuUGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 78115 0.68 0.614781
Target:  5'- aUCAgGCCGUgaugaacgugucgaUGCUGCCGC--CCGCAGa -3'
miRNA:   3'- gAGU-UGGCA--------------ACGGCGGCGucGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 6704 0.69 0.577484
Target:  5'- ---uGCCGauggUGCCGCUGCcGCCGguGu -3'
miRNA:   3'- gaguUGGCa---ACGGCGGCGuCGGCguC- -5'
11659 5' -59.1 NC_003102.1 + 128948 0.69 0.56748
Target:  5'- gUCGGCCGccGCCGCUaccccgccgGCAGCUGCc- -3'
miRNA:   3'- gAGUUGGCaaCGGCGG---------CGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 48845 0.7 0.518241
Target:  5'- uUCGccGCCGUcGCCGCCGCcgcGUCGCu- -3'
miRNA:   3'- gAGU--UGGCAaCGGCGGCGu--CGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 66922 0.7 0.499013
Target:  5'- gUCGucgUCGUcGCCGCCGCAGUCGUc- -3'
miRNA:   3'- gAGUu--GGCAaCGGCGGCGUCGGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.