Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11659 | 5' | -59.1 | NC_003102.1 | + | 134537 | 0.76 | 0.226215 |
Target: 5'- -gCGACCGccGCCGCCGCcGCCGCc- -3' miRNA: 3'- gaGUUGGCaaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 133729 | 0.73 | 0.351296 |
Target: 5'- gUUGAUCGggGCCGCguCGCAGCCGCc- -3' miRNA: 3'- gAGUUGGCaaCGGCG--GCGUCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 128948 | 0.69 | 0.56748 |
Target: 5'- gUCGGCCGccGCCGCUaccccgccgGCAGCUGCc- -3' miRNA: 3'- gAGUUGGCaaCGGCGG---------CGUCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 111406 | 0.66 | 0.745477 |
Target: 5'- uUUAGCgGUggcgaugaugacGCCGCCGCcGCCGCc- -3' miRNA: 3'- gAGUUGgCAa-----------CGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 92959 | 0.68 | 0.658316 |
Target: 5'- cCUCuACUGUUGCUGaCGCcGCCGCc- -3' miRNA: 3'- -GAGuUGGCAACGGCgGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 81550 | 0.67 | 0.708409 |
Target: 5'- gUCGACgCGgucGCCGUCGCAGacgaCGCGu -3' miRNA: 3'- gAGUUG-GCaa-CGGCGGCGUCg---GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 80717 | 0.77 | 0.205236 |
Target: 5'- -cCGAUCGUUGCUGCCGCuGCUGCu- -3' miRNA: 3'- gaGUUGGCAACGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 80530 | 0.67 | 0.667401 |
Target: 5'- aUC-ACCGUUGCgaCGCCaacaugagcagcaGCAGCgGCAGc -3' miRNA: 3'- gAGuUGGCAACG--GCGG-------------CGUCGgCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 78115 | 0.68 | 0.614781 |
Target: 5'- aUCAgGCCGUgaugaacgugucgaUGCUGCCGC--CCGCAGa -3' miRNA: 3'- gAGU-UGGCA--------------ACGGCGGCGucGGCGUC- -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 78049 | 0.67 | 0.698482 |
Target: 5'- -aUAAUCGUacgGCCGCCGCGGagauaUGCAa -3' miRNA: 3'- gaGUUGGCAa--CGGCGGCGUCg----GCGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 72540 | 0.8 | 0.140992 |
Target: 5'- --gAAUCGUUGCCGCCGCcGCCGCu- -3' miRNA: 3'- gagUUGGCAACGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 71479 | 0.72 | 0.408321 |
Target: 5'- gUCAccGCCGUUGCCGCCuCuGUCGCu- -3' miRNA: 3'- gAGU--UGGCAACGGCGGcGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 66922 | 0.7 | 0.499013 |
Target: 5'- gUCGucgUCGUcGCCGCCGCAGUCGUc- -3' miRNA: 3'- gAGUu--GGCAaCGGCGGCGUCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 63242 | 0.66 | 0.756914 |
Target: 5'- uCUgGACCG-UGCCGCCGCcgAGaUCGUg- -3' miRNA: 3'- -GAgUUGGCaACGGCGGCG--UC-GGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 60362 | 0.68 | 0.617818 |
Target: 5'- aUC-GCCGccGCCGCCGCcGCUGCc- -3' miRNA: 3'- gAGuUGGCaaCGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 59339 | 0.79 | 0.156061 |
Target: 5'- uCUCcggAACCGUUGCCGCCGUcGCCGUc- -3' miRNA: 3'- -GAG---UUGGCAACGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 58657 | 0.67 | 0.688501 |
Target: 5'- gUCGA-CGUcGCCGUCGCAGUCgGCAu -3' miRNA: 3'- gAGUUgGCAaCGGCGGCGUCGG-CGUc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 50496 | 0.66 | 0.756914 |
Target: 5'- --aGACCGUUGUCGuuGCaaacGGUCGCu- -3' miRNA: 3'- gagUUGGCAACGGCggCG----UCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 49157 | 0.74 | 0.328647 |
Target: 5'- aCUCcauuACCGaUGCCGCCGCcGCUGCu- -3' miRNA: 3'- -GAGu---UGGCaACGGCGGCGuCGGCGuc -5' |
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11659 | 5' | -59.1 | NC_003102.1 | + | 48845 | 0.7 | 0.518241 |
Target: 5'- uUCGccGCCGUcGCCGCCGCcgcGUCGCu- -3' miRNA: 3'- gAGU--UGGCAaCGGCGGCGu--CGGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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