miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 92094 0.67 0.926545
Target:  5'- aGGUGACGGCGgCGCCGgcgucggaGGCGAa-- -3'
miRNA:   3'- -UCGCUGUUGCaGCGGCag------CUGCUacu -5'
11661 3' -54 NC_003102.1 + 127679 0.67 0.921056
Target:  5'- aAGCGGCGcaauCGUCGCaacaGUCG-CGAUa- -3'
miRNA:   3'- -UCGCUGUu---GCAGCGg---CAGCuGCUAcu -5'
11661 3' -54 NC_003102.1 + 130895 0.68 0.917069
Target:  5'- uGGCGACGGCGUCGCUguguguagcauuuggGauauugggcgugaUCGACGAa-- -3'
miRNA:   3'- -UCGCUGUUGCAGCGG---------------C-------------AGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 99979 0.68 0.915325
Target:  5'- cGCGAC--CGUCGCCGaCcACGAUGc -3'
miRNA:   3'- uCGCUGuuGCAGCGGCaGcUGCUACu -5'
11661 3' -54 NC_003102.1 + 6671 0.68 0.909354
Target:  5'- uGGCGuuGGCGUUGCCGcUGGCGuugcUGAu -3'
miRNA:   3'- -UCGCugUUGCAGCGGCaGCUGCu---ACU- -5'
11661 3' -54 NC_003102.1 + 33111 0.68 0.909354
Target:  5'- cGGCGuuACGGCGcUGCCGU--GCGAUGAa -3'
miRNA:   3'- -UCGC--UGUUGCaGCGGCAgcUGCUACU- -5'
11661 3' -54 NC_003102.1 + 63909 0.68 0.896698
Target:  5'- cGCaGACAACgGUUGCCGcaaaGGCGAUGu -3'
miRNA:   3'- uCG-CUGUUG-CAGCGGCag--CUGCUACu -5'
11661 3' -54 NC_003102.1 + 108646 0.68 0.896698
Target:  5'- uGGCGuCAuucugauCGUCGCCGUUGACa---- -3'
miRNA:   3'- -UCGCuGUu------GCAGCGGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 81571 0.68 0.890018
Target:  5'- uGCGGCGAggcuguCGUCGaaGUCGACGcgGu -3'
miRNA:   3'- uCGCUGUU------GCAGCggCAGCUGCuaCu -5'
11661 3' -54 NC_003102.1 + 18466 0.69 0.883109
Target:  5'- cGGCGGCAGguuCGUCGgCGUCGGCc---- -3'
miRNA:   3'- -UCGCUGUU---GCAGCgGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 66766 0.69 0.883109
Target:  5'- cGGCGGCGACGaCGaCGaCGACGAuugUGAu -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCU---ACU- -5'
11661 3' -54 NC_003102.1 + 133868 0.69 0.882405
Target:  5'- cAGCGACGACGcggccgagcugcaUCGCCuuGcCGuCGGUGAg -3'
miRNA:   3'- -UCGCUGUUGC-------------AGCGG--CaGCuGCUACU- -5'
11661 3' -54 NC_003102.1 + 102036 0.69 0.875974
Target:  5'- aAGCGGCGGCGguggCGgUGgCGGCGGUGu -3'
miRNA:   3'- -UCGCUGUUGCa---GCgGCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 79726 0.69 0.875974
Target:  5'- cGCGAUuACGgguCCGUCGAgGGUGAg -3'
miRNA:   3'- uCGCUGuUGCagcGGCAGCUgCUACU- -5'
11661 3' -54 NC_003102.1 + 87437 0.69 0.868619
Target:  5'- -uCGAuCGACGUCGgCGaCGGCGGUGGc -3'
miRNA:   3'- ucGCU-GUUGCAGCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 46160 0.69 0.868619
Target:  5'- -aCGGCAAUGUCGuuGauggcggCGGCGGUGGu -3'
miRNA:   3'- ucGCUGUUGCAGCggCa------GCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 87831 0.69 0.864103
Target:  5'- gAGaCGGCuuCGUCGCCGgcacgaaguugcuuuUCGGCGAcGAu -3'
miRNA:   3'- -UC-GCUGuuGCAGCGGC---------------AGCUGCUaCU- -5'
11661 3' -54 NC_003102.1 + 81397 0.69 0.86105
Target:  5'- cGGCGACcGCGUCGaCuUCGACGAc-- -3'
miRNA:   3'- -UCGCUGuUGCAGCgGcAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 93580 0.69 0.85327
Target:  5'- cGCGGCGcucucGCcUCGaCCGUCGACGAa-- -3'
miRNA:   3'- uCGCUGU-----UGcAGC-GGCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 18308 0.7 0.845289
Target:  5'- cGcCGACGAaccUGcCGCCGUCG-CGAUGGa -3'
miRNA:   3'- uC-GCUGUU---GCaGCGGCAGCuGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.