miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 58644 0.7 0.828745
Target:  5'- aAGCGGugucgucguCGACGUCGCCGUCGcaguCGGc-- -3'
miRNA:   3'- -UCGCU---------GUUGCAGCGGCAGCu---GCUacu -5'
11661 3' -54 NC_003102.1 + 58812 0.72 0.736528
Target:  5'- uGCGACGGCGaCGUCGaCGACGAc-- -3'
miRNA:   3'- uCGCUGUUGCaGCGGCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 60202 0.66 0.961855
Target:  5'- cAGCGGCGGCG--GCgG-CGGCGAUGc -3'
miRNA:   3'- -UCGCUGUUGCagCGgCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 63909 0.68 0.896698
Target:  5'- cGCaGACAACgGUUGCCGcaaaGGCGAUGu -3'
miRNA:   3'- uCG-CUGUUG-CAGCGGCag--CUGCUACu -5'
11661 3' -54 NC_003102.1 + 66766 0.69 0.883109
Target:  5'- cGGCGGCGACGaCGaCGaCGACGAuugUGAu -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCU---ACU- -5'
11661 3' -54 NC_003102.1 + 70246 0.66 0.958256
Target:  5'- ---aACGACGUCGCCGgUGACaAUGAc -3'
miRNA:   3'- ucgcUGUUGCAGCGGCaGCUGcUACU- -5'
11661 3' -54 NC_003102.1 + 71913 0.83 0.225717
Target:  5'- gAGCaGCGugGUCGCCGUCGGCGAc-- -3'
miRNA:   3'- -UCGcUGUugCAGCGGCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 72692 0.67 0.936797
Target:  5'- cGGCGGCAACGauuCCGgcaUGugGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCagcGGCa--GCugCUACU- -5'
11661 3' -54 NC_003102.1 + 75700 0.7 0.828745
Target:  5'- cGGCGGCGcCGUCaCCGaCGACGAcGAc -3'
miRNA:   3'- -UCGCUGUuGCAGcGGCaGCUGCUaCU- -5'
11661 3' -54 NC_003102.1 + 75854 0.7 0.820197
Target:  5'- cGGUGACGGCGcCGCCGauuUCGAgCGuauUGAa -3'
miRNA:   3'- -UCGCUGUUGCaGCGGC---AGCU-GCu--ACU- -5'
11661 3' -54 NC_003102.1 + 79726 0.69 0.875974
Target:  5'- cGCGAUuACGgguCCGUCGAgGGUGAg -3'
miRNA:   3'- uCGCUGuUGCagcGGCAGCUgCUACU- -5'
11661 3' -54 NC_003102.1 + 81263 0.7 0.837111
Target:  5'- cGGCGACAACGgcaucgggaagaUCaCCGUUGGCGAgGGg -3'
miRNA:   3'- -UCGCUGUUGC------------AGcGGCAGCUGCUaCU- -5'
11661 3' -54 NC_003102.1 + 81397 0.69 0.86105
Target:  5'- cGGCGACcGCGUCGaCuUCGACGAc-- -3'
miRNA:   3'- -UCGCUGuUGCAGCgGcAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 81571 0.68 0.890018
Target:  5'- uGCGGCGAggcuguCGUCGaaGUCGACGcgGu -3'
miRNA:   3'- uCGCUGUU------GCAGCggCAGCUGCuaCu -5'
11661 3' -54 NC_003102.1 + 85175 0.72 0.710672
Target:  5'- uGCGugGACGcUCcaauugugauaguuuGCCGUCGuCGAUGAu -3'
miRNA:   3'- uCGCugUUGC-AG---------------CGGCAGCuGCUACU- -5'
11661 3' -54 NC_003102.1 + 87437 0.69 0.868619
Target:  5'- -uCGAuCGACGUCGgCGaCGGCGGUGGc -3'
miRNA:   3'- ucGCU-GUUGCAGCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 87673 0.67 0.941562
Target:  5'- uGcCGGCGACGaaGCCGUCucguucauuaGACGAUGc -3'
miRNA:   3'- uC-GCUGUUGCagCGGCAG----------CUGCUACu -5'
11661 3' -54 NC_003102.1 + 87831 0.69 0.864103
Target:  5'- gAGaCGGCuuCGUCGCCGgcacgaaguugcuuuUCGGCGAcGAu -3'
miRNA:   3'- -UC-GCUGuuGCAGCGGC---------------AGCUGCUaCU- -5'
11661 3' -54 NC_003102.1 + 92094 0.67 0.926545
Target:  5'- aGGUGACGGCGgCGCCGgcgucggaGGCGAa-- -3'
miRNA:   3'- -UCGCUGUUGCaGCGGCag------CUGCUacu -5'
11661 3' -54 NC_003102.1 + 93580 0.69 0.85327
Target:  5'- cGCGGCGcucucGCcUCGaCCGUCGACGAa-- -3'
miRNA:   3'- uCGCUGU-----UGcAGC-GGCAGCUGCUacu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.