Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11661 | 3' | -54 | NC_003102.1 | + | 85175 | 0.72 | 0.710672 |
Target: 5'- uGCGugGACGcUCcaauugugauaguuuGCCGUCGuCGAUGAu -3' miRNA: 3'- uCGCugUUGC-AG---------------CGGCAGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 17737 | 0.72 | 0.736528 |
Target: 5'- cGGCGGCGGCGgCGgCGgCGGCGGUGc -3' miRNA: 3'- -UCGCUGUUGCaGCgGCaGCUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 114990 | 0.72 | 0.746316 |
Target: 5'- cGGCGACAGCgGUgGCgGU-GGCGGUGGu -3' miRNA: 3'- -UCGCUGUUG-CAgCGgCAgCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 112985 | 0.71 | 0.775036 |
Target: 5'- --aGAgAACGUCGUCGUCGucgugGCGGUGGu -3' miRNA: 3'- ucgCUgUUGCAGCGGCAGC-----UGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 134384 | 0.71 | 0.785288 |
Target: 5'- cGGCGGCGGCGgucgcaagaauuuggCGCCGcCGGCGGa-- -3' miRNA: 3'- -UCGCUGUUGCa--------------GCGGCaGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 128887 | 0.7 | 0.820197 |
Target: 5'- uGGUGAUggUGUCGUCGgc-ACGAUGAa -3' miRNA: 3'- -UCGCUGuuGCAGCGGCagcUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 15691 | 0.7 | 0.820197 |
Target: 5'- uGCGGCaAACGUCGCgaCGcCGACGAg-- -3' miRNA: 3'- uCGCUG-UUGCAGCG--GCaGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 81397 | 0.69 | 0.86105 |
Target: 5'- cGGCGACcGCGUCGaCuUCGACGAc-- -3' miRNA: 3'- -UCGCUGuUGCAGCgGcAGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 18308 | 0.7 | 0.845289 |
Target: 5'- cGcCGACGAaccUGcCGCCGUCG-CGAUGGa -3' miRNA: 3'- uC-GCUGUU---GCaGCGGCAGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 81263 | 0.7 | 0.837111 |
Target: 5'- cGGCGACAACGgcaucgggaagaUCaCCGUUGGCGAgGGg -3' miRNA: 3'- -UCGCUGUUGC------------AGcGGCAGCUGCUaCU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 98218 | 0.7 | 0.837111 |
Target: 5'- aAGCaGACAGacaGcCGaCGUCGACGAUGGu -3' miRNA: 3'- -UCG-CUGUUg--CaGCgGCAGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 107876 | 0.7 | 0.828745 |
Target: 5'- cGGUGGaagagaAACGUUGCUGUCGuCGAUGc -3' miRNA: 3'- -UCGCUg-----UUGCAGCGGCAGCuGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 75700 | 0.7 | 0.828745 |
Target: 5'- cGGCGGCGcCGUCaCCGaCGACGAcGAc -3' miRNA: 3'- -UCGCUGUuGCAGcGGCaGCUGCUaCU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 58644 | 0.7 | 0.828745 |
Target: 5'- aAGCGGugucgucguCGACGUCGCCGUCGcaguCGGc-- -3' miRNA: 3'- -UCGCU---------GUUGCAGCGGCAGCu---GCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 113736 | 0.67 | 0.946088 |
Target: 5'- gAGCGGCcgccACGUCGauuCgGUCGACGAc-- -3' miRNA: 3'- -UCGCUGu---UGCAGC---GgCAGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 41474 | 0.66 | 0.952837 |
Target: 5'- uAGCGGCGGCGaggacaagauucgCGUCGUCGACu---- -3' miRNA: 3'- -UCGCUGUUGCa------------GCGGCAGCUGcuacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 15905 | 0.66 | 0.954431 |
Target: 5'- uAGUgGACAuguuCGUgGCCGauUCGAUGGUGGc -3' miRNA: 3'- -UCG-CUGUu---GCAgCGGC--AGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 70246 | 0.66 | 0.958256 |
Target: 5'- ---aACGACGUCGCCGgUGACaAUGAc -3' miRNA: 3'- ucgcUGUUGCAGCGGCaGCUGcUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 3970 | 0.66 | 0.958256 |
Target: 5'- cGCGACGuaucgaACGUCGCagaGguaUCGACGAa-- -3' miRNA: 3'- uCGCUGU------UGCAGCGg--C---AGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 35056 | 1.09 | 0.004535 |
Target: 5'- cAGCGACAACGUCGCCGUCGACGAUGAg -3' miRNA: 3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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