miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 62040 1.13 0.00428
Target:  5'- gACAUUGAUCACUACGGCGACGACGGCa -3'
miRNA:   3'- -UGUAACUAGUGAUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 78440 0.84 0.282712
Target:  5'- ----aGAUgACgGCGGCGACGACGGCg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 49019 0.82 0.357489
Target:  5'- cGCAUUcaagcGA-CGCgGCGGCGGCGACGGCg -3'
miRNA:   3'- -UGUAA-----CUaGUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 33092 0.81 0.391053
Target:  5'- ----cGAUC-CUGuCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUAGuGAU-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17725 0.78 0.513039
Target:  5'- ----aGAagGCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 60185 0.76 0.647909
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 87438 0.76 0.647909
Target:  5'- ----cGAUCGacguCGGCGACGGCGGUg -3'
miRNA:   3'- uguaaCUAGUgau-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 105503 0.76 0.637386
Target:  5'- ----cGAUaACaGCGGCGACGACGGUg -3'
miRNA:   3'- uguaaCUAgUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 57067 0.76 0.647909
Target:  5'- gACggUGAcCACUAUGGUggaggcggaGGCGACGGCa -3'
miRNA:   3'- -UGuaACUaGUGAUGCCG---------CUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 134369 0.75 0.710446
Target:  5'- ---gUGua-GCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaACuagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 32381 0.75 0.710446
Target:  5'- uACGUUuucccGAUCgguuuucagacgGCUGCGGCuGCGGCGGCa -3'
miRNA:   3'- -UGUAA-----CUAG------------UGAUGCCGcUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 45847 0.75 0.700142
Target:  5'- aGCGgcGAUagaagagGCaGCGGCGGCGGCGGCu -3'
miRNA:   3'- -UGUaaCUAg------UGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 119309 0.75 0.700142
Target:  5'- cACAUUGGcCGCaaACGGCGGCGcCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa-UGCCGCUGCuGCCG- -5'
11666 3' -51.5 NC_003102.1 + 66752 0.75 0.689777
Target:  5'- gACGaUGAcgACUGCGGCGGCGACGa- -3'
miRNA:   3'- -UGUaACUagUGAUGCCGCUGCUGCcg -5'
11666 3' -51.5 NC_003102.1 + 111588 0.75 0.700142
Target:  5'- aGCGgagGAg----GCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGUaa-CUagugaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 100150 0.74 0.740895
Target:  5'- uCGUUGGUCGCaucgUGGuCGGCGACGGUc -3'
miRNA:   3'- uGUAACUAGUGau--GCC-GCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 16431 0.74 0.74788
Target:  5'- -gGUUGAUCGCcGCGauucugccgcagucGCGGCGGCGGUc -3'
miRNA:   3'- ugUAACUAGUGaUGC--------------CGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 72718 0.74 0.730832
Target:  5'- aACggUGGUgGaaaugguaGCGGCGGCGGCGGCa -3'
miRNA:   3'- -UGuaACUAgUga------UGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 71912 0.73 0.789501
Target:  5'- aGCAgcgUGGUCGCcguCGGCGACaaggacaGCGGCa -3'
miRNA:   3'- -UGUa--ACUAGUGau-GCCGCUGc------UGCCG- -5'
11666 3' -51.5 NC_003102.1 + 81252 0.73 0.77044
Target:  5'- cGCGU---UUugUACGGCGACaACGGCa -3'
miRNA:   3'- -UGUAacuAGugAUGCCGCUGcUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.