miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 3' -54.9 NC_003102.1 + 1285 0.66 0.949992
Target:  5'- aAGCCGAgacgaUCGCGUCgaGCGUgauaGCCg -3'
miRNA:   3'- gUUGGCU-----AGUGCAGg-CGCAagcgCGG- -5'
11669 3' -54.9 NC_003102.1 + 57907 0.66 0.949992
Target:  5'- -cGCCGAgagGCuaaUCGCGUUCGcCGCCg -3'
miRNA:   3'- guUGGCUag-UGca-GGCGCAAGC-GCGG- -5'
11669 3' -54.9 NC_003102.1 + 31815 0.66 0.949992
Target:  5'- gAACCgGAUCACuauucgguucuGUCCGaCGgUCGUGCa -3'
miRNA:   3'- gUUGG-CUAGUG-----------CAGGC-GCaAGCGCGg -5'
11669 3' -54.9 NC_003102.1 + 31046 0.66 0.949992
Target:  5'- aAACgUGAUgaACGUCCGCGUucaagauaucgaUCGUGUCc -3'
miRNA:   3'- gUUG-GCUAg-UGCAGGCGCA------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 63207 0.66 0.945719
Target:  5'- uCGACCGuUUGCGUgCGUacGaaCGCGCCu -3'
miRNA:   3'- -GUUGGCuAGUGCAgGCG--CaaGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 133728 0.66 0.945719
Target:  5'- -uGuuGAUCGgGgCCGCG-UCGCaGCCg -3'
miRNA:   3'- guUggCUAGUgCaGGCGCaAGCG-CGG- -5'
11669 3' -54.9 NC_003102.1 + 133520 0.66 0.941213
Target:  5'- aAGCCGaAUCGCugaUCCGCGU---CGCCg -3'
miRNA:   3'- gUUGGC-UAGUGc--AGGCGCAagcGCGG- -5'
11669 3' -54.9 NC_003102.1 + 49872 0.66 0.936471
Target:  5'- uGGCCGGUC-CGUCgGCGaggaCGC-CCg -3'
miRNA:   3'- gUUGGCUAGuGCAGgCGCaa--GCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 95239 0.66 0.936471
Target:  5'- uCGGCCGAaCACaUCaacaaggGCGUagGCGCCg -3'
miRNA:   3'- -GUUGGCUaGUGcAGg------CGCAagCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 129278 0.66 0.935984
Target:  5'- gCAGUCGAUCAaauugcaacauuUGUgauuaucuccugaCCGCGUUCGuCGCCg -3'
miRNA:   3'- -GUUGGCUAGU------------GCA-------------GGCGCAAGC-GCGG- -5'
11669 3' -54.9 NC_003102.1 + 98587 0.66 0.935003
Target:  5'- uGAUCGAUCACGUaauucucuuucaUCGUGUuaucgauuccguugUUGCGCUg -3'
miRNA:   3'- gUUGGCUAGUGCA------------GGCGCA--------------AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 61733 0.66 0.931493
Target:  5'- aGAUCGGaCACGUCCGUGaUCGacgaGaCCa -3'
miRNA:   3'- gUUGGCUaGUGCAGGCGCaAGCg---C-GG- -5'
11669 3' -54.9 NC_003102.1 + 112233 0.66 0.931493
Target:  5'- uGACCGAUCuCGUCUacacCGUUCGauCCg -3'
miRNA:   3'- gUUGGCUAGuGCAGGc---GCAAGCgcGG- -5'
11669 3' -54.9 NC_003102.1 + 77825 0.66 0.931493
Target:  5'- -uGCUGGUCACGUUuucgaCGCG-UCGCuCCu -3'
miRNA:   3'- guUGGCUAGUGCAG-----GCGCaAGCGcGG- -5'
11669 3' -54.9 NC_003102.1 + 36528 0.66 0.931493
Target:  5'- gGGCCGAga--GUCUgcaguGCGUUCGCGgCg -3'
miRNA:   3'- gUUGGCUagugCAGG-----CGCAAGCGCgG- -5'
11669 3' -54.9 NC_003102.1 + 23608 0.67 0.926277
Target:  5'- aGACCGggCGCGUuuGCcGUuuaccUCGaGCCg -3'
miRNA:   3'- gUUGGCuaGUGCAggCG-CA-----AGCgCGG- -5'
11669 3' -54.9 NC_003102.1 + 8450 0.67 0.926277
Target:  5'- aGGCCGAggUCGCGUCUucCGUUucuucuaaaCGCGCUa -3'
miRNA:   3'- gUUGGCU--AGUGCAGGc-GCAA---------GCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 117421 0.67 0.915132
Target:  5'- gAAuaGGUCACGUUgGCGgcucUUGUGCCu -3'
miRNA:   3'- gUUggCUAGUGCAGgCGCa---AGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 85907 0.67 0.915132
Target:  5'- aAACaGggCGUGcCCGaCGUUCGCGCCa -3'
miRNA:   3'- gUUGgCuaGUGCaGGC-GCAAGCGCGG- -5'
11669 3' -54.9 NC_003102.1 + 121010 0.67 0.909205
Target:  5'- uCGAuCCGAUCACGg--GCGa--GCGCCa -3'
miRNA:   3'- -GUU-GGCUAGUGCaggCGCaagCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.