miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11669 5' -56.1 NC_003102.1 + 41934 0.66 0.890015
Target:  5'- uGCGGCGaccacGCGAuCCGUGGuCGAUGCGu- -3'
miRNA:   3'- -UGUCGU-----UGCU-GGCGUCuGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 102035 0.66 0.890015
Target:  5'- aGCGGCGGCGGUgGCGGugG-CgGCGGUg -3'
miRNA:   3'- -UGUCGUUGCUGgCGUCugCuG-CGCUA- -5'
11669 5' -56.1 NC_003102.1 + 73512 0.66 0.883075
Target:  5'- -aGGCAcgauuACGACCGaCGacGACGACGaCGAg -3'
miRNA:   3'- ugUCGU-----UGCUGGC-GU--CUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 62966 0.66 0.883075
Target:  5'- -gGGCAG-GAUCGCGGACuuggaGCGCGAUc -3'
miRNA:   3'- ugUCGUUgCUGGCGUCUGc----UGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 41282 0.66 0.875909
Target:  5'- uGCuGCGucuCGgaACCGUAgucGACGACGCGAa -3'
miRNA:   3'- -UGuCGUu--GC--UGGCGU---CUGCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 70723 0.66 0.86852
Target:  5'- cCAGC--UGACCGUcGACGACGUGu- -3'
miRNA:   3'- uGUCGuuGCUGGCGuCUGCUGCGCua -5'
11669 5' -56.1 NC_003102.1 + 15240 0.66 0.866261
Target:  5'- cCAGCGACGuugacaacgauccuGCCGCGuACGAguUGCGAUa -3'
miRNA:   3'- uGUCGUUGC--------------UGGCGUcUGCU--GCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 48954 0.66 0.860142
Target:  5'- cCAGCGACGAgaGCAGuaGCGACGgcuauucCGAUg -3'
miRNA:   3'- uGUCGUUGCUggCGUC--UGCUGC-------GCUA- -5'
11669 5' -56.1 NC_003102.1 + 14325 0.67 0.853098
Target:  5'- uGCAGCAACcGCCGCcacgAGACu-CGUGAg -3'
miRNA:   3'- -UGUCGUUGcUGGCG----UCUGcuGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 31498 0.67 0.852305
Target:  5'- gACGGUAAuuuuuggUGGCCGCuuGACGgagACGCGAUa -3'
miRNA:   3'- -UGUCGUU-------GCUGGCGu-CUGC---UGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 21498 0.67 0.845077
Target:  5'- cGCGGacACG-CCGCAGGCGuACGCGc- -3'
miRNA:   3'- -UGUCguUGCuGGCGUCUGC-UGCGCua -5'
11669 5' -56.1 NC_003102.1 + 80565 0.67 0.845077
Target:  5'- gGCAGCAACGAUCGgaacaugaaCAGA-GGCGCa-- -3'
miRNA:   3'- -UGUCGUUGCUGGC---------GUCUgCUGCGcua -5'
11669 5' -56.1 NC_003102.1 + 119694 0.67 0.836859
Target:  5'- aACAGCAGCGcaacaaCGacuaAGACGACGaCGAc -3'
miRNA:   3'- -UGUCGUUGCug----GCg---UCUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 38908 0.67 0.819861
Target:  5'- gGCGGCGACGACgacgacgaUGaCGG-UGACGCGAUc -3'
miRNA:   3'- -UGUCGUUGCUG--------GC-GUCuGCUGCGCUA- -5'
11669 5' -56.1 NC_003102.1 + 45862 0.67 0.819861
Target:  5'- gGCAGCGGCGGCgGCGGcuACGGuCGaUGAUu -3'
miRNA:   3'- -UGUCGUUGCUGgCGUC--UGCU-GC-GCUA- -5'
11669 5' -56.1 NC_003102.1 + 75699 0.67 0.819861
Target:  5'- uCGGCGGCG-CCGUcaccGACGACGaCGAc -3'
miRNA:   3'- uGUCGUUGCuGGCGu---CUGCUGC-GCUa -5'
11669 5' -56.1 NC_003102.1 + 66764 0.67 0.811096
Target:  5'- uGCGGCGGCGACgac-GACGACGaCGAUu -3'
miRNA:   3'- -UGUCGUUGCUGgcguCUGCUGC-GCUA- -5'
11669 5' -56.1 NC_003102.1 + 69552 0.68 0.802166
Target:  5'- aACAGCGACGAa-GUAaACGACGUGGc -3'
miRNA:   3'- -UGUCGUUGCUggCGUcUGCUGCGCUa -5'
11669 5' -56.1 NC_003102.1 + 17202 0.68 0.793079
Target:  5'- uCAGCGACGugCGC-GACG-CGCu-- -3'
miRNA:   3'- uGUCGUUGCugGCGuCUGCuGCGcua -5'
11669 5' -56.1 NC_003102.1 + 49006 0.68 0.793079
Target:  5'- --cGCGGCGGCgGC-GACGGCgGCGAa -3'
miRNA:   3'- uguCGUUGCUGgCGuCUGCUG-CGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.