miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 73841 0.66 0.955665
Target:  5'- aCGCcGAuaUGCGA-CGCCcGAAACACUu -3'
miRNA:   3'- aGCGcCU--GCGCUaGCGGuCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 110220 0.66 0.943037
Target:  5'- aUCGUGGACGCGcccgagaucAUCGUguGcgaucaacucGAAUGCCu -3'
miRNA:   3'- -AGCGCCUGCGC---------UAGCGguC----------UUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 58129 0.66 0.943037
Target:  5'- -gGCGGuCGCGAUCGaaaauGAGuuuguCACCg -3'
miRNA:   3'- agCGCCuGCGCUAGCggu--CUUu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 62187 0.66 0.947481
Target:  5'- gCGaCGGGC-CGAaaCGCCGauuGAAACACCc -3'
miRNA:   3'- aGC-GCCUGcGCUa-GCGGU---CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 21550 0.66 0.955665
Target:  5'- uUCGCGaGACG-GGUCccauuuCUAGAAACACg -3'
miRNA:   3'- -AGCGC-CUGCgCUAGc-----GGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 118368 0.66 0.959412
Target:  5'- cUCGCaacuGGACGcCGAUCagaacGCaaugauGAAACGCCa -3'
miRNA:   3'- -AGCG----CCUGC-GCUAG-----CGgu----CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 90322 0.66 0.959412
Target:  5'- --uUGGACGCGG-CGCCgaacaAGAcgaugGGCGCCg -3'
miRNA:   3'- agcGCCUGCGCUaGCGG-----UCU-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 1593 0.66 0.951689
Target:  5'- -gGCGGugGUGGUgGUgguggCGGAGGCAUg -3'
miRNA:   3'- agCGCCugCGCUAgCG-----GUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 22962 0.66 0.943037
Target:  5'- -gGCGGACGCGuUCGUgAuGAugcguAUGCCg -3'
miRNA:   3'- agCGCCUGCGCuAGCGgU-CUu----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 135677 0.66 0.959412
Target:  5'- aUCGaugGGAuCGCcgucGUCGCCAGAAAUugaauuACCg -3'
miRNA:   3'- -AGCg--CCU-GCGc---UAGCGGUCUUUG------UGG- -5'
11670 5' -54.3 NC_003102.1 + 16418 0.66 0.959412
Target:  5'- aCGaCGGGCGUcugguuGAUCGCCGcGAuuCuGCCg -3'
miRNA:   3'- aGC-GCCUGCG------CUAGCGGU-CUuuG-UGG- -5'
11670 5' -54.3 NC_003102.1 + 94181 0.66 0.955665
Target:  5'- --uCGGACGUGAacagCGUCGGuuACAUCa -3'
miRNA:   3'- agcGCCUGCGCUa---GCGGUCuuUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 75053 0.66 0.959412
Target:  5'- cUCGaUGGACuGuUGAUCGCCGacgcuaccgacGAGAUGCCa -3'
miRNA:   3'- -AGC-GCCUG-C-GCUAGCGGU-----------CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 31898 0.67 0.935433
Target:  5'- aUGCGGACgGCGGUCcGCUgacuuggaacgaucuGGAAACGUCg -3'
miRNA:   3'- aGCGCCUG-CGCUAG-CGG---------------UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 133527 0.67 0.928274
Target:  5'- aUCGCuGAucCGCG-UCGCCGGAucgACCg -3'
miRNA:   3'- -AGCGcCU--GCGCuAGCGGUCUuugUGG- -5'
11670 5' -54.3 NC_003102.1 + 13838 0.67 0.917227
Target:  5'- gCGCGGACaCG-UUGCCGGu--UACCu -3'
miRNA:   3'- aGCGCCUGcGCuAGCGGUCuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 131513 0.67 0.911343
Target:  5'- -aGUGcGAUGCGA-CGCCcGAGACAUUa -3'
miRNA:   3'- agCGC-CUGCGCUaGCGGuCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 92368 0.67 0.928274
Target:  5'- uUCGUacGGA-GCGAUCGCCAGuucGGCuuCg -3'
miRNA:   3'- -AGCG--CCUgCGCUAGCGGUCu--UUGugG- -5'
11670 5' -54.3 NC_003102.1 + 105953 0.67 0.933436
Target:  5'- aUCG-GGGCGC--UCGCCAGccacguuCGCCg -3'
miRNA:   3'- -AGCgCCUGCGcuAGCGGUCuuu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 90026 0.67 0.938356
Target:  5'- -gGCGGAagaaaccguuCGCGucGUCGCaggGGAGAUGCCg -3'
miRNA:   3'- agCGCCU----------GCGC--UAGCGg--UCUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.