Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11670 | 5' | -54.3 | NC_003102.1 | + | 72302 | 1.12 | 0.002874 |
Target: 5'- aUCGCGGACGCGAUCGCCAGAAACACCc -3' miRNA: 3'- -AGCGCCUGCGCUAGCGGUCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 63528 | 0.77 | 0.441509 |
Target: 5'- aCGCGGACGUGAUCGguuguCCGaAAGCAUCg -3' miRNA: 3'- aGCGCCUGCGCUAGC-----GGUcUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 20139 | 0.76 | 0.497856 |
Target: 5'- cUCGUGGGCGCGGcucUCGCgucGAGCGCCa -3' miRNA: 3'- -AGCGCCUGCGCU---AGCGgucUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 40271 | 0.72 | 0.697204 |
Target: 5'- aCGUGGACGCGcAUCGCauagcguacgucgaCAGGGAgcuuCGCCg -3' miRNA: 3'- aGCGCCUGCGC-UAGCG--------------GUCUUU----GUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 15701 | 0.71 | 0.755581 |
Target: 5'- gUCGCGacgccgacgagucGCGCGAUCGCCAuuGcCACCa -3' miRNA: 3'- -AGCGCc------------UGCGCUAGCGGUcuUuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 110115 | 0.71 | 0.759422 |
Target: 5'- --uUGGACGUGAUCauagugccgGCCGGAucggGACGCCg -3' miRNA: 3'- agcGCCUGCGCUAG---------CGGUCU----UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 62959 | 0.71 | 0.777408 |
Target: 5'- aUCGCGGacuuggaGCGCGAUCGCgAuGAACuAUCa -3' miRNA: 3'- -AGCGCC-------UGCGCUAGCGgUcUUUG-UGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 84628 | 0.7 | 0.796732 |
Target: 5'- gCGUcagGGACGCGGUCGCUA-AGAUAUCc -3' miRNA: 3'- aGCG---CCUGCGCUAGCGGUcUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 42255 | 0.7 | 0.805707 |
Target: 5'- -gGCGGAucguuuagUGCGcgCGUCAGAuugugcGACGCCg -3' miRNA: 3'- agCGCCU--------GCGCuaGCGGUCU------UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 134382 | 0.7 | 0.823173 |
Target: 5'- -gGCGGcgGCgGCGGUCGCaAGAAuuugGCGCCg -3' miRNA: 3'- agCGCC--UG-CGCUAGCGgUCUU----UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 95025 | 0.69 | 0.839937 |
Target: 5'- aCGCcaaaGACGCG-UCGUCGGcguGCACCa -3' miRNA: 3'- aGCGc---CUGCGCuAGCGGUCuu-UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 10046 | 0.69 | 0.848037 |
Target: 5'- -aGCauuGACGUGggCGCCGGAGugAUCg -3' miRNA: 3'- agCGc--CUGCGCuaGCGGUCUUugUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 111409 | 0.69 | 0.863637 |
Target: 5'- -aGCGGugGCGAUgaugaCGCCGccgcCGCCg -3' miRNA: 3'- agCGCCugCGCUA-----GCGGUcuuuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 86087 | 0.69 | 0.863637 |
Target: 5'- uUCGaCGGacaugaugGCGCGAaCGUCGGgcACGCCc -3' miRNA: 3'- -AGC-GCC--------UGCGCUaGCGGUCuuUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 22521 | 0.69 | 0.871124 |
Target: 5'- -aGCGGucgaaGCGGUCGgCAucGGCGCCa -3' miRNA: 3'- agCGCCug---CGCUAGCgGUcuUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 36552 | 0.69 | 0.871124 |
Target: 5'- cCGaCGGAucggUGUGAUCGCCGccgcGCACCa -3' miRNA: 3'- aGC-GCCU----GCGCUAGCGGUcuu-UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 130741 | 0.69 | 0.871124 |
Target: 5'- -aGC-GACGCcGUCGCCAGcauGAACACg -3' miRNA: 3'- agCGcCUGCGcUAGCGGUC---UUUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 39369 | 0.68 | 0.878395 |
Target: 5'- gCGCGGACGCcacaaguuuGAUCGagaCGGAA-CGCa -3' miRNA: 3'- aGCGCCUGCG---------CUAGCg--GUCUUuGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 31945 | 0.68 | 0.878395 |
Target: 5'- aCGUGG-UGCG-UCGCCAGugaggcGAUGCCa -3' miRNA: 3'- aGCGCCuGCGCuAGCGGUCu-----UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 123753 | 0.68 | 0.885445 |
Target: 5'- aUCGCGGuguGCGCgcgcguucGAUUGCCAaacgauacuGAGACACa -3' miRNA: 3'- -AGCGCC---UGCG--------CUAGCGGU---------CUUUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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