Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11670 | 5' | -54.3 | NC_003102.1 | + | 133527 | 0.67 | 0.928274 |
Target: 5'- aUCGCuGAucCGCG-UCGCCGGAucgACCg -3' miRNA: 3'- -AGCGcCU--GCGCuAGCGGUCUuugUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 114438 | 0.68 | 0.892268 |
Target: 5'- aUCGCGucGAguuuUGCGAcuacaagauUCGUCAGAGACACg -3' miRNA: 3'- -AGCGC--CU----GCGCU---------AGCGGUCUUUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 63528 | 0.77 | 0.441509 |
Target: 5'- aCGCGGACGUGAUCGguuguCCGaAAGCAUCg -3' miRNA: 3'- aGCGCCUGCGCUAGC-----GGUcUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 16334 | 0.68 | 0.892268 |
Target: 5'- aCGUGGACGa-GUCGCUcaagauGAAACACg -3' miRNA: 3'- aGCGCCUGCgcUAGCGGu-----CUUUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 110115 | 0.71 | 0.759422 |
Target: 5'- --uUGGACGUGAUCauagugccgGCCGGAucggGACGCCg -3' miRNA: 3'- agcGCCUGCGCUAG---------CGGUCU----UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 134382 | 0.7 | 0.823173 |
Target: 5'- -gGCGGcgGCgGCGGUCGCaAGAAuuugGCGCCg -3' miRNA: 3'- agCGCC--UG-CGCUAGCGgUCUU----UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 95025 | 0.69 | 0.839937 |
Target: 5'- aCGCcaaaGACGCG-UCGUCGGcguGCACCa -3' miRNA: 3'- aGCGc---CUGCGCuAGCGGUCuu-UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 15701 | 0.71 | 0.755581 |
Target: 5'- gUCGCGacgccgacgagucGCGCGAUCGCCAuuGcCACCa -3' miRNA: 3'- -AGCGCc------------UGCGCUAGCGGUcuUuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 131513 | 0.67 | 0.911343 |
Target: 5'- -aGUGcGAUGCGA-CGCCcGAGACAUUa -3' miRNA: 3'- agCGC-CUGCGCUaGCGGuCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 13838 | 0.67 | 0.917227 |
Target: 5'- gCGCGGACaCG-UUGCCGGu--UACCu -3' miRNA: 3'- aGCGCCUGcGCuAGCGGUCuuuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 40271 | 0.72 | 0.697204 |
Target: 5'- aCGUGGACGCGcAUCGCauagcguacgucgaCAGGGAgcuuCGCCg -3' miRNA: 3'- aGCGCCUGCGC-UAGCG--------------GUCUUU----GUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 31898 | 0.67 | 0.935433 |
Target: 5'- aUGCGGACgGCGGUCcGCUgacuuggaacgaucuGGAAACGUCg -3' miRNA: 3'- aGCGCCUG-CGCUAG-CGG---------------UCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 58129 | 0.66 | 0.943037 |
Target: 5'- -gGCGGuCGCGAUCGaaaauGAGuuuguCACCg -3' miRNA: 3'- agCGCCuGCGCUAGCggu--CUUu----GUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 110220 | 0.66 | 0.943037 |
Target: 5'- aUCGUGGACGCGcccgagaucAUCGUguGcgaucaacucGAAUGCCu -3' miRNA: 3'- -AGCGCCUGCGC---------UAGCGguC----------UUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 1593 | 0.66 | 0.951689 |
Target: 5'- -gGCGGugGUGGUgGUgguggCGGAGGCAUg -3' miRNA: 3'- agCGCCugCGCUAgCG-----GUCUUUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 73841 | 0.66 | 0.955665 |
Target: 5'- aCGCcGAuaUGCGA-CGCCcGAAACACUu -3' miRNA: 3'- aGCGcCU--GCGCUaGCGGuCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 94181 | 0.66 | 0.955665 |
Target: 5'- --uCGGACGUGAacagCGUCGGuuACAUCa -3' miRNA: 3'- agcGCCUGCGCUa---GCGGUCuuUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 16418 | 0.66 | 0.959412 |
Target: 5'- aCGaCGGGCGUcugguuGAUCGCCGcGAuuCuGCCg -3' miRNA: 3'- aGC-GCCUGCG------CUAGCGGU-CUuuG-UGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 75053 | 0.66 | 0.959412 |
Target: 5'- cUCGaUGGACuGuUGAUCGCCGacgcuaccgacGAGAUGCCa -3' miRNA: 3'- -AGC-GCCUG-C-GCUAGCGGU-----------CUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 135677 | 0.66 | 0.959412 |
Target: 5'- aUCGaugGGAuCGCcgucGUCGCCAGAAAUugaauuACCg -3' miRNA: 3'- -AGCg--CCU-GCGc---UAGCGGUCUUUG------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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