miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 1593 0.66 0.951689
Target:  5'- -gGCGGugGUGGUgGUgguggCGGAGGCAUg -3'
miRNA:   3'- agCGCCugCGCUAgCG-----GUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 16334 0.68 0.892268
Target:  5'- aCGUGGACGa-GUCGCUcaagauGAAACACg -3'
miRNA:   3'- aGCGCCUGCgcUAGCGGu-----CUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 114438 0.68 0.892268
Target:  5'- aUCGCGucGAguuuUGCGAcuacaagauUCGUCAGAGACACg -3'
miRNA:   3'- -AGCGC--CU----GCGCU---------AGCGGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 131513 0.67 0.911343
Target:  5'- -aGUGcGAUGCGA-CGCCcGAGACAUUa -3'
miRNA:   3'- agCGC-CUGCGCUaGCGGuCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 13838 0.67 0.917227
Target:  5'- gCGCGGACaCG-UUGCCGGu--UACCu -3'
miRNA:   3'- aGCGCCUGcGCuAGCGGUCuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 133527 0.67 0.928274
Target:  5'- aUCGCuGAucCGCG-UCGCCGGAucgACCg -3'
miRNA:   3'- -AGCGcCU--GCGCuAGCGGUCUuugUGG- -5'
11670 5' -54.3 NC_003102.1 + 31898 0.67 0.935433
Target:  5'- aUGCGGACgGCGGUCcGCUgacuuggaacgaucuGGAAACGUCg -3'
miRNA:   3'- aGCGCCUG-CGCUAG-CGG---------------UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 58129 0.66 0.943037
Target:  5'- -gGCGGuCGCGAUCGaaaauGAGuuuguCACCg -3'
miRNA:   3'- agCGCCuGCGCUAGCggu--CUUu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 110220 0.66 0.943037
Target:  5'- aUCGUGGACGCGcccgagaucAUCGUguGcgaucaacucGAAUGCCu -3'
miRNA:   3'- -AGCGCCUGCGC---------UAGCGguC----------UUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 39369 0.68 0.878395
Target:  5'- gCGCGGACGCcacaaguuuGAUCGagaCGGAA-CGCa -3'
miRNA:   3'- aGCGCCUGCG---------CUAGCg--GUCUUuGUGg -5'
11670 5' -54.3 NC_003102.1 + 130741 0.69 0.871124
Target:  5'- -aGC-GACGCcGUCGCCAGcauGAACACg -3'
miRNA:   3'- agCGcCUGCGcUAGCGGUC---UUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 36552 0.69 0.871124
Target:  5'- cCGaCGGAucggUGUGAUCGCCGccgcGCACCa -3'
miRNA:   3'- aGC-GCCU----GCGCUAGCGGUcuu-UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 40271 0.72 0.697204
Target:  5'- aCGUGGACGCGcAUCGCauagcguacgucgaCAGGGAgcuuCGCCg -3'
miRNA:   3'- aGCGCCUGCGC-UAGCG--------------GUCUUU----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 15701 0.71 0.755581
Target:  5'- gUCGCGacgccgacgagucGCGCGAUCGCCAuuGcCACCa -3'
miRNA:   3'- -AGCGCc------------UGCGCUAGCGGUcuUuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 110115 0.71 0.759422
Target:  5'- --uUGGACGUGAUCauagugccgGCCGGAucggGACGCCg -3'
miRNA:   3'- agcGCCUGCGCUAG---------CGGUCU----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 134382 0.7 0.823173
Target:  5'- -gGCGGcgGCgGCGGUCGCaAGAAuuugGCGCCg -3'
miRNA:   3'- agCGCC--UG-CGCUAGCGgUCUU----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 95025 0.69 0.839937
Target:  5'- aCGCcaaaGACGCG-UCGUCGGcguGCACCa -3'
miRNA:   3'- aGCGc---CUGCGCuAGCGGUCuu-UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 10046 0.69 0.848037
Target:  5'- -aGCauuGACGUGggCGCCGGAGugAUCg -3'
miRNA:   3'- agCGc--CUGCGCuaGCGGUCUUugUGG- -5'
11670 5' -54.3 NC_003102.1 + 111409 0.69 0.863637
Target:  5'- -aGCGGugGCGAUgaugaCGCCGccgcCGCCg -3'
miRNA:   3'- agCGCCugCGCUA-----GCGGUcuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22521 0.69 0.871124
Target:  5'- -aGCGGucgaaGCGGUCGgCAucGGCGCCa -3'
miRNA:   3'- agCGCCug---CGCUAGCgGUcuUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.