miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 90322 0.66 0.959412
Target:  5'- --uUGGACGCGG-CGCCgaacaAGAcgaugGGCGCCg -3'
miRNA:   3'- agcGCCUGCGCUaGCGG-----UCU-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 123753 0.68 0.885445
Target:  5'- aUCGCGGuguGCGCgcgcguucGAUUGCCAaacgauacuGAGACACa -3'
miRNA:   3'- -AGCGCC---UGCG--------CUAGCGGU---------CUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 81551 0.67 0.911343
Target:  5'- -aGUcGACGCGGUCGCCgucgcAGAcGACGCg -3'
miRNA:   3'- agCGcCUGCGCUAGCGG-----UCU-UUGUGg -5'
11670 5' -54.3 NC_003102.1 + 92368 0.67 0.928274
Target:  5'- uUCGUacGGA-GCGAUCGCCAGuucGGCuuCg -3'
miRNA:   3'- -AGCG--CCUgCGCUAGCGGUCu--UUGugG- -5'
11670 5' -54.3 NC_003102.1 + 90026 0.67 0.938356
Target:  5'- -gGCGGAagaaaccguuCGCGucGUCGCaggGGAGAUGCCg -3'
miRNA:   3'- agCGCCU----------GCGC--UAGCGg--UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22962 0.66 0.943037
Target:  5'- -gGCGGACGCGuUCGUgAuGAugcguAUGCCg -3'
miRNA:   3'- agCGCCUGCGCuAGCGgU-CUu----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 20139 0.76 0.497856
Target:  5'- cUCGUGGGCGCGGcucUCGCgucGAGCGCCa -3'
miRNA:   3'- -AGCGCCUGCGCU---AGCGgucUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 62959 0.71 0.777408
Target:  5'- aUCGCGGacuuggaGCGCGAUCGCgAuGAACuAUCa -3'
miRNA:   3'- -AGCGCC-------UGCGCUAGCGgUcUUUG-UGG- -5'
11670 5' -54.3 NC_003102.1 + 86087 0.69 0.863637
Target:  5'- uUCGaCGGacaugaugGCGCGAaCGUCGGgcACGCCc -3'
miRNA:   3'- -AGC-GCC--------UGCGCUaGCGGUCuuUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 88738 0.68 0.90522
Target:  5'- aCGUGGACGCGuugCGCgaucuuacCGGucuCACCg -3'
miRNA:   3'- aGCGCCUGCGCua-GCG--------GUCuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 105953 0.67 0.933436
Target:  5'- aUCG-GGGCGC--UCGCCAGccacguuCGCCg -3'
miRNA:   3'- -AGCgCCUGCGcuAGCGGUCuuu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 118368 0.66 0.959412
Target:  5'- cUCGCaacuGGACGcCGAUCagaacGCaaugauGAAACGCCa -3'
miRNA:   3'- -AGCG----CCUGC-GCUAG-----CGgu----CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 42255 0.7 0.805707
Target:  5'- -gGCGGAucguuuagUGCGcgCGUCAGAuugugcGACGCCg -3'
miRNA:   3'- agCGCCU--------GCGCuaGCGGUCU------UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 21550 0.66 0.955665
Target:  5'- uUCGCGaGACG-GGUCccauuuCUAGAAACACg -3'
miRNA:   3'- -AGCGC-CUGCgCUAGc-----GGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 103243 0.67 0.909531
Target:  5'- cCGCGGACGCGAcccaaaCGUC-GAAucugguggcgguccACGCCc -3'
miRNA:   3'- aGCGCCUGCGCUa-----GCGGuCUU--------------UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 84628 0.7 0.796732
Target:  5'- gCGUcagGGACGCGGUCGCUA-AGAUAUCc -3'
miRNA:   3'- aGCG---CCUGCGCUAGCGGUcUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 72302 1.12 0.002874
Target:  5'- aUCGCGGACGCGAUCGCCAGAAACACCc -3'
miRNA:   3'- -AGCGCCUGCGCUAGCGGUCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 62187 0.66 0.947481
Target:  5'- gCGaCGGGC-CGAaaCGCCGauuGAAACACCc -3'
miRNA:   3'- aGC-GCCUGcGCUa-GCGGU---CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 31945 0.68 0.878395
Target:  5'- aCGUGG-UGCG-UCGCCAGugaggcGAUGCCa -3'
miRNA:   3'- aGCGCCuGCGCuAGCGGUCu-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 131513 0.67 0.911343
Target:  5'- -aGUGcGAUGCGA-CGCCcGAGACAUUa -3'
miRNA:   3'- agCGC-CUGCGCUaGCGGuCUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.