miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 10046 0.69 0.848037
Target:  5'- -aGCauuGACGUGggCGCCGGAGugAUCg -3'
miRNA:   3'- agCGc--CUGCGCuaGCGGUCUUugUGG- -5'
11670 5' -54.3 NC_003102.1 + 111409 0.69 0.863637
Target:  5'- -aGCGGugGCGAUgaugaCGCCGccgcCGCCg -3'
miRNA:   3'- agCGCCugCGCUA-----GCGGUcuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22521 0.69 0.871124
Target:  5'- -aGCGGucgaaGCGGUCGgCAucGGCGCCa -3'
miRNA:   3'- agCGCCug---CGCUAGCgGUcuUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 36552 0.69 0.871124
Target:  5'- cCGaCGGAucggUGUGAUCGCCGccgcGCACCa -3'
miRNA:   3'- aGC-GCCU----GCGCUAGCGGUcuu-UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 130741 0.69 0.871124
Target:  5'- -aGC-GACGCcGUCGCCAGcauGAACACg -3'
miRNA:   3'- agCGcCUGCGcUAGCGGUC---UUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 39369 0.68 0.878395
Target:  5'- gCGCGGACGCcacaaguuuGAUCGagaCGGAA-CGCa -3'
miRNA:   3'- aGCGCCUGCG---------CUAGCg--GUCUUuGUGg -5'
11670 5' -54.3 NC_003102.1 + 81551 0.67 0.911343
Target:  5'- -aGUcGACGCGGUCGCCgucgcAGAcGACGCg -3'
miRNA:   3'- agCGcCUGCGCUAGCGG-----UCU-UUGUGg -5'
11670 5' -54.3 NC_003102.1 + 103243 0.67 0.909531
Target:  5'- cCGCGGACGCGAcccaaaCGUC-GAAucugguggcgguccACGCCc -3'
miRNA:   3'- aGCGCCUGCGCUa-----GCGGuCUU--------------UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 88738 0.68 0.90522
Target:  5'- aCGUGGACGCGuugCGCgaucuuacCGGucuCACCg -3'
miRNA:   3'- aGCGCCUGCGCua-GCG--------GUCuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 123753 0.68 0.885445
Target:  5'- aUCGCGGuguGCGCgcgcguucGAUUGCCAaacgauacuGAGACACa -3'
miRNA:   3'- -AGCGCC---UGCG--------CUAGCGGU---------CUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 31945 0.68 0.878395
Target:  5'- aCGUGG-UGCG-UCGCCAGugaggcGAUGCCa -3'
miRNA:   3'- aGCGCCuGCGCuAGCGGUCu-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 86087 0.69 0.863637
Target:  5'- uUCGaCGGacaugaugGCGCGAaCGUCGGgcACGCCc -3'
miRNA:   3'- -AGC-GCC--------UGCGCUaGCGGUCuuUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 92368 0.67 0.928274
Target:  5'- uUCGUacGGA-GCGAUCGCCAGuucGGCuuCg -3'
miRNA:   3'- -AGCG--CCUgCGCUAGCGGUCu--UUGugG- -5'
11670 5' -54.3 NC_003102.1 + 105953 0.67 0.933436
Target:  5'- aUCG-GGGCGC--UCGCCAGccacguuCGCCg -3'
miRNA:   3'- -AGCgCCUGCGcuAGCGGUCuuu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 90026 0.67 0.938356
Target:  5'- -gGCGGAagaaaccguuCGCGucGUCGCaggGGAGAUGCCg -3'
miRNA:   3'- agCGCCU----------GCGC--UAGCGg--UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22962 0.66 0.943037
Target:  5'- -gGCGGACGCGuUCGUgAuGAugcguAUGCCg -3'
miRNA:   3'- agCGCCUGCGCuAGCGgU-CUu----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 62187 0.66 0.947481
Target:  5'- gCGaCGGGC-CGAaaCGCCGauuGAAACACCc -3'
miRNA:   3'- aGC-GCCUGcGCUa-GCGGU---CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 21550 0.66 0.955665
Target:  5'- uUCGCGaGACG-GGUCccauuuCUAGAAACACg -3'
miRNA:   3'- -AGCGC-CUGCgCUAGc-----GGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 118368 0.66 0.959412
Target:  5'- cUCGCaacuGGACGcCGAUCagaacGCaaugauGAAACGCCa -3'
miRNA:   3'- -AGCG----CCUGC-GCUAG-----CGgu----CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 72302 1.12 0.002874
Target:  5'- aUCGCGGACGCGAUCGCCAGAAACACCc -3'
miRNA:   3'- -AGCGCCUGCGCUAGCGGUCUUUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.