Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11670 | 5' | -54.3 | NC_003102.1 | + | 72302 | 1.12 | 0.002874 |
Target: 5'- aUCGCGGACGCGAUCGCCAGAAACACCc -3' miRNA: 3'- -AGCGCCUGCGCUAGCGGUCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 73841 | 0.66 | 0.955665 |
Target: 5'- aCGCcGAuaUGCGA-CGCCcGAAACACUu -3' miRNA: 3'- aGCGcCU--GCGCUaGCGGuCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 75053 | 0.66 | 0.959412 |
Target: 5'- cUCGaUGGACuGuUGAUCGCCGacgcuaccgacGAGAUGCCa -3' miRNA: 3'- -AGC-GCCUG-C-GCUAGCGGU-----------CUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 81551 | 0.67 | 0.911343 |
Target: 5'- -aGUcGACGCGGUCGCCgucgcAGAcGACGCg -3' miRNA: 3'- agCGcCUGCGCUAGCGG-----UCU-UUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 84628 | 0.7 | 0.796732 |
Target: 5'- gCGUcagGGACGCGGUCGCUA-AGAUAUCc -3' miRNA: 3'- aGCG---CCUGCGCUAGCGGUcUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 86087 | 0.69 | 0.863637 |
Target: 5'- uUCGaCGGacaugaugGCGCGAaCGUCGGgcACGCCc -3' miRNA: 3'- -AGC-GCC--------UGCGCUaGCGGUCuuUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 88738 | 0.68 | 0.90522 |
Target: 5'- aCGUGGACGCGuugCGCgaucuuacCGGucuCACCg -3' miRNA: 3'- aGCGCCUGCGCua-GCG--------GUCuuuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 90026 | 0.67 | 0.938356 |
Target: 5'- -gGCGGAagaaaccguuCGCGucGUCGCaggGGAGAUGCCg -3' miRNA: 3'- agCGCCU----------GCGC--UAGCGg--UCUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 90322 | 0.66 | 0.959412 |
Target: 5'- --uUGGACGCGG-CGCCgaacaAGAcgaugGGCGCCg -3' miRNA: 3'- agcGCCUGCGCUaGCGG-----UCU-----UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 92368 | 0.67 | 0.928274 |
Target: 5'- uUCGUacGGA-GCGAUCGCCAGuucGGCuuCg -3' miRNA: 3'- -AGCG--CCUgCGCUAGCGGUCu--UUGugG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 94181 | 0.66 | 0.955665 |
Target: 5'- --uCGGACGUGAacagCGUCGGuuACAUCa -3' miRNA: 3'- agcGCCUGCGCUa---GCGGUCuuUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 95025 | 0.69 | 0.839937 |
Target: 5'- aCGCcaaaGACGCG-UCGUCGGcguGCACCa -3' miRNA: 3'- aGCGc---CUGCGCuAGCGGUCuu-UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 103243 | 0.67 | 0.909531 |
Target: 5'- cCGCGGACGCGAcccaaaCGUC-GAAucugguggcgguccACGCCc -3' miRNA: 3'- aGCGCCUGCGCUa-----GCGGuCUU--------------UGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 105953 | 0.67 | 0.933436 |
Target: 5'- aUCG-GGGCGC--UCGCCAGccacguuCGCCg -3' miRNA: 3'- -AGCgCCUGCGcuAGCGGUCuuu----GUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 110115 | 0.71 | 0.759422 |
Target: 5'- --uUGGACGUGAUCauagugccgGCCGGAucggGACGCCg -3' miRNA: 3'- agcGCCUGCGCUAG---------CGGUCU----UUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 110220 | 0.66 | 0.943037 |
Target: 5'- aUCGUGGACGCGcccgagaucAUCGUguGcgaucaacucGAAUGCCu -3' miRNA: 3'- -AGCGCCUGCGC---------UAGCGguC----------UUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 111409 | 0.69 | 0.863637 |
Target: 5'- -aGCGGugGCGAUgaugaCGCCGccgcCGCCg -3' miRNA: 3'- agCGCCugCGCUA-----GCGGUcuuuGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 114438 | 0.68 | 0.892268 |
Target: 5'- aUCGCGucGAguuuUGCGAcuacaagauUCGUCAGAGACACg -3' miRNA: 3'- -AGCGC--CU----GCGCU---------AGCGGUCUUUGUGg -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 118368 | 0.66 | 0.959412 |
Target: 5'- cUCGCaacuGGACGcCGAUCagaacGCaaugauGAAACGCCa -3' miRNA: 3'- -AGCG----CCUGC-GCUAG-----CGgu----CUUUGUGG- -5' |
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11670 | 5' | -54.3 | NC_003102.1 | + | 123753 | 0.68 | 0.885445 |
Target: 5'- aUCGCGGuguGCGCgcgcguucGAUUGCCAaacgauacuGAGACACa -3' miRNA: 3'- -AGCGCC---UGCG--------CUAGCGGU---------CUUUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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