miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 84628 0.7 0.796732
Target:  5'- gCGUcagGGACGCGGUCGCUA-AGAUAUCc -3'
miRNA:   3'- aGCG---CCUGCGCUAGCGGUcUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 81551 0.67 0.911343
Target:  5'- -aGUcGACGCGGUCGCCgucgcAGAcGACGCg -3'
miRNA:   3'- agCGcCUGCGCUAGCGG-----UCU-UUGUGg -5'
11670 5' -54.3 NC_003102.1 + 75053 0.66 0.959412
Target:  5'- cUCGaUGGACuGuUGAUCGCCGacgcuaccgacGAGAUGCCa -3'
miRNA:   3'- -AGC-GCCUG-C-GCUAGCGGU-----------CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 73841 0.66 0.955665
Target:  5'- aCGCcGAuaUGCGA-CGCCcGAAACACUu -3'
miRNA:   3'- aGCGcCU--GCGCUaGCGGuCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 72302 1.12 0.002874
Target:  5'- aUCGCGGACGCGAUCGCCAGAAACACCc -3'
miRNA:   3'- -AGCGCCUGCGCUAGCGGUCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 63528 0.77 0.441509
Target:  5'- aCGCGGACGUGAUCGguuguCCGaAAGCAUCg -3'
miRNA:   3'- aGCGCCUGCGCUAGC-----GGUcUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 62959 0.71 0.777408
Target:  5'- aUCGCGGacuuggaGCGCGAUCGCgAuGAACuAUCa -3'
miRNA:   3'- -AGCGCC-------UGCGCUAGCGgUcUUUG-UGG- -5'
11670 5' -54.3 NC_003102.1 + 62187 0.66 0.947481
Target:  5'- gCGaCGGGC-CGAaaCGCCGauuGAAACACCc -3'
miRNA:   3'- aGC-GCCUGcGCUa-GCGGU---CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 58129 0.66 0.943037
Target:  5'- -gGCGGuCGCGAUCGaaaauGAGuuuguCACCg -3'
miRNA:   3'- agCGCCuGCGCUAGCggu--CUUu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 42255 0.7 0.805707
Target:  5'- -gGCGGAucguuuagUGCGcgCGUCAGAuugugcGACGCCg -3'
miRNA:   3'- agCGCCU--------GCGCuaGCGGUCU------UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 40271 0.72 0.697204
Target:  5'- aCGUGGACGCGcAUCGCauagcguacgucgaCAGGGAgcuuCGCCg -3'
miRNA:   3'- aGCGCCUGCGC-UAGCG--------------GUCUUU----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 39369 0.68 0.878395
Target:  5'- gCGCGGACGCcacaaguuuGAUCGagaCGGAA-CGCa -3'
miRNA:   3'- aGCGCCUGCG---------CUAGCg--GUCUUuGUGg -5'
11670 5' -54.3 NC_003102.1 + 36552 0.69 0.871124
Target:  5'- cCGaCGGAucggUGUGAUCGCCGccgcGCACCa -3'
miRNA:   3'- aGC-GCCU----GCGCUAGCGGUcuu-UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 31945 0.68 0.878395
Target:  5'- aCGUGG-UGCG-UCGCCAGugaggcGAUGCCa -3'
miRNA:   3'- aGCGCCuGCGCuAGCGGUCu-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 31898 0.67 0.935433
Target:  5'- aUGCGGACgGCGGUCcGCUgacuuggaacgaucuGGAAACGUCg -3'
miRNA:   3'- aGCGCCUG-CGCUAG-CGG---------------UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22962 0.66 0.943037
Target:  5'- -gGCGGACGCGuUCGUgAuGAugcguAUGCCg -3'
miRNA:   3'- agCGCCUGCGCuAGCGgU-CUu----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 22521 0.69 0.871124
Target:  5'- -aGCGGucgaaGCGGUCGgCAucGGCGCCa -3'
miRNA:   3'- agCGCCug---CGCUAGCgGUcuUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 21550 0.66 0.955665
Target:  5'- uUCGCGaGACG-GGUCccauuuCUAGAAACACg -3'
miRNA:   3'- -AGCGC-CUGCgCUAGc-----GGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 20139 0.76 0.497856
Target:  5'- cUCGUGGGCGCGGcucUCGCgucGAGCGCCa -3'
miRNA:   3'- -AGCGCCUGCGCU---AGCGgucUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 16418 0.66 0.959412
Target:  5'- aCGaCGGGCGUcugguuGAUCGCCGcGAuuCuGCCg -3'
miRNA:   3'- aGC-GCCUGCG------CUAGCGGU-CUuuG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.