miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 5' -54.3 NC_003102.1 + 135677 0.66 0.959412
Target:  5'- aUCGaugGGAuCGCcgucGUCGCCAGAAAUugaauuACCg -3'
miRNA:   3'- -AGCg--CCU-GCGc---UAGCGGUCUUUG------UGG- -5'
11670 5' -54.3 NC_003102.1 + 134382 0.7 0.823173
Target:  5'- -gGCGGcgGCgGCGGUCGCaAGAAuuugGCGCCg -3'
miRNA:   3'- agCGCC--UG-CGCUAGCGgUCUU----UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 133527 0.67 0.928274
Target:  5'- aUCGCuGAucCGCG-UCGCCGGAucgACCg -3'
miRNA:   3'- -AGCGcCU--GCGCuAGCGGUCUuugUGG- -5'
11670 5' -54.3 NC_003102.1 + 131513 0.67 0.911343
Target:  5'- -aGUGcGAUGCGA-CGCCcGAGACAUUa -3'
miRNA:   3'- agCGC-CUGCGCUaGCGGuCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 130741 0.69 0.871124
Target:  5'- -aGC-GACGCcGUCGCCAGcauGAACACg -3'
miRNA:   3'- agCGcCUGCGcUAGCGGUC---UUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 123753 0.68 0.885445
Target:  5'- aUCGCGGuguGCGCgcgcguucGAUUGCCAaacgauacuGAGACACa -3'
miRNA:   3'- -AGCGCC---UGCG--------CUAGCGGU---------CUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 118368 0.66 0.959412
Target:  5'- cUCGCaacuGGACGcCGAUCagaacGCaaugauGAAACGCCa -3'
miRNA:   3'- -AGCG----CCUGC-GCUAG-----CGgu----CUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 114438 0.68 0.892268
Target:  5'- aUCGCGucGAguuuUGCGAcuacaagauUCGUCAGAGACACg -3'
miRNA:   3'- -AGCGC--CU----GCGCU---------AGCGGUCUUUGUGg -5'
11670 5' -54.3 NC_003102.1 + 111409 0.69 0.863637
Target:  5'- -aGCGGugGCGAUgaugaCGCCGccgcCGCCg -3'
miRNA:   3'- agCGCCugCGCUA-----GCGGUcuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 110220 0.66 0.943037
Target:  5'- aUCGUGGACGCGcccgagaucAUCGUguGcgaucaacucGAAUGCCu -3'
miRNA:   3'- -AGCGCCUGCGC---------UAGCGguC----------UUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 110115 0.71 0.759422
Target:  5'- --uUGGACGUGAUCauagugccgGCCGGAucggGACGCCg -3'
miRNA:   3'- agcGCCUGCGCUAG---------CGGUCU----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 105953 0.67 0.933436
Target:  5'- aUCG-GGGCGC--UCGCCAGccacguuCGCCg -3'
miRNA:   3'- -AGCgCCUGCGcuAGCGGUCuuu----GUGG- -5'
11670 5' -54.3 NC_003102.1 + 103243 0.67 0.909531
Target:  5'- cCGCGGACGCGAcccaaaCGUC-GAAucugguggcgguccACGCCc -3'
miRNA:   3'- aGCGCCUGCGCUa-----GCGGuCUU--------------UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 95025 0.69 0.839937
Target:  5'- aCGCcaaaGACGCG-UCGUCGGcguGCACCa -3'
miRNA:   3'- aGCGc---CUGCGCuAGCGGUCuu-UGUGG- -5'
11670 5' -54.3 NC_003102.1 + 94181 0.66 0.955665
Target:  5'- --uCGGACGUGAacagCGUCGGuuACAUCa -3'
miRNA:   3'- agcGCCUGCGCUa---GCGGUCuuUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 92368 0.67 0.928274
Target:  5'- uUCGUacGGA-GCGAUCGCCAGuucGGCuuCg -3'
miRNA:   3'- -AGCG--CCUgCGCUAGCGGUCu--UUGugG- -5'
11670 5' -54.3 NC_003102.1 + 90322 0.66 0.959412
Target:  5'- --uUGGACGCGG-CGCCgaacaAGAcgaugGGCGCCg -3'
miRNA:   3'- agcGCCUGCGCUaGCGG-----UCU-----UUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 90026 0.67 0.938356
Target:  5'- -gGCGGAagaaaccguuCGCGucGUCGCaggGGAGAUGCCg -3'
miRNA:   3'- agCGCCU----------GCGC--UAGCGg--UCUUUGUGG- -5'
11670 5' -54.3 NC_003102.1 + 88738 0.68 0.90522
Target:  5'- aCGUGGACGCGuugCGCgaucuuacCGGucuCACCg -3'
miRNA:   3'- aGCGCCUGCGCua-GCG--------GUCuuuGUGG- -5'
11670 5' -54.3 NC_003102.1 + 86087 0.69 0.863637
Target:  5'- uUCGaCGGacaugaugGCGCGAaCGUCGGgcACGCCc -3'
miRNA:   3'- -AGC-GCC--------UGCGCUaGCGGUCuuUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.