miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 112644 0.71 0.989935
Target:  5'- uUACAagAUUAuuuuAUGAAAAGUCaGCCAGGu -3'
miRNA:   3'- uAUGU--UAGU----UGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 104801 0.93 0.179454
Target:  5'- -cACAAUCAACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUUAGUUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103654 0.82 0.609184
Target:  5'- -cGCGGaCAcguuugagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUUaGU---------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 99463 0.71 0.989935
Target:  5'- -cACGAUCGACGAuccAGUC-GCCAGc -3'
miRNA:   3'- uaUGUUAGUUGCUuu-UCAGcCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 76646 1.1 0.02008
Target:  5'- cAUACAAUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 137404 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 137328 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 89311 0.84 0.511997
Target:  5'- uUACAuguUUAaccACGAAAAGUCGGCCGGGu -3'
miRNA:   3'- uAUGUu--AGU---UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67281 0.69 0.997981
Target:  5'- uUGCAAaC-AUGuuuAAAGUCGGCCAGa -3'
miRNA:   3'- uAUGUUaGuUGCu--UUUCAGCCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 134623 0.69 0.997981
Target:  5'- cAUACGAUaauugCGACGuGAGAGUUGGCCGa- -3'
miRNA:   3'- -UAUGUUA-----GUUGC-UUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 10649 0.8 0.72919
Target:  5'- -gACuuaagC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuua--GuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26100 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10484 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67033 0.81 0.686131
Target:  5'- uUACAacacGUUAugaauauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU----UAGUu------GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10564 0.84 0.491201
Target:  5'- aGUGau-UCAgcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUguuAGU--UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 97841 0.72 0.978548
Target:  5'- -gACGGguuuguACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 32065 0.71 0.991249
Target:  5'- -gGCAacgcAUCGACGuu--GUCGGCgAGGg -3'
miRNA:   3'- uaUGU----UAGUUGCuuuuCAGCCGgUCC- -5'
11672 3' -46.6 NC_003102.1 + 23233 0.7 0.992423
Target:  5'- gGUACAacgcGUCAAauucggcacCGuAAcAGUCGGCCAGGc -3'
miRNA:   3'- -UAUGU----UAGUU---------GC-UUuUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 76444 0.69 0.995931
Target:  5'- aGUAaAGUUuAUGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 104601 0.69 0.997576
Target:  5'- aAUAaAGUUuAUGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.