miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 36711 0.66 0.99992
Target:  5'- -gGCGAUCAcacCGAuccGUCGGCCGu- -3'
miRNA:   3'- uaUGUUAGUu--GCUuuuCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 103768 0.82 0.631216
Target:  5'- -aACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103654 0.82 0.609184
Target:  5'- -cGCGGaCAcguuugagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUUaGU---------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 76646 1.1 0.02008
Target:  5'- cAUACAAUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 36374 0.69 0.996559
Target:  5'- ---aAAUU-ACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 137328 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 99463 0.71 0.989935
Target:  5'- -cACGAUCGACGAuccAGUC-GCCAGc -3'
miRNA:   3'- uaUGUUAGUUGCUuu-UCAGcCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 112644 0.71 0.989935
Target:  5'- uUACAagAUUAuuuuAUGAAAAGUCaGCCAGGu -3'
miRNA:   3'- uAUGU--UAGU----UGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26534 0.72 0.973175
Target:  5'- uUGCGucAUCuuucuCGAAAAGUCGGCCAc- -3'
miRNA:   3'- uAUGU--UAGuu---GCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 56163 0.8 0.718543
Target:  5'- uUAUGAUUuauuuUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAGuu---GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 27859 0.75 0.907324
Target:  5'- -cGCAAUCGguGCGGAGAaUCGGgCCAGGc -3'
miRNA:   3'- uaUGUUAGU--UGCUUUUcAGCC-GGUCC- -5'
11672 3' -46.6 NC_003102.1 + 61547 0.72 0.973175
Target:  5'- gAUAUAuGUUuACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-UAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 126773 0.66 0.999821
Target:  5'- -cACGAUCGugGAGGAuaCGGCUuGGu -3'
miRNA:   3'- uaUGUUAGUugCUUUUcaGCCGGuCC- -5'
11672 3' -46.6 NC_003102.1 + 42829 0.76 0.878757
Target:  5'- -aACAuGUUAAUGAAAAGUCaGCCGGGu -3'
miRNA:   3'- uaUGU-UAGUUGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 49147 0.67 0.999624
Target:  5'- -aACAAUCGAUGGAuacccaAAGUggCGGCCAa- -3'
miRNA:   3'- uaUGUUAGUUGCUU------UUCA--GCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 26013 0.72 0.980225
Target:  5'- ---aAGUCAcauguaaccuguuuACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaugUUAGU--------------UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 104526 0.79 0.749143
Target:  5'- uGUGCAAUaauuGCGucaucuaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAgu--UGC-------UUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103709 0.82 0.620195
Target:  5'- -gACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 112394 0.67 0.999526
Target:  5'- -aACGGUguaGACGAGA--UCGGUCAGGu -3'
miRNA:   3'- uaUGUUAg--UUGCUUUucAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 137404 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.