miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 121814 0.66 0.999884
Target:  5'- cGAACCUGgCcGACUUUUCGauaaGUCaUCg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCa---CAG-AG- -5'
11673 3' -46.1 NC_003102.1 + 133033 0.66 0.999848
Target:  5'- aUAAACUUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 112471 0.66 0.999934
Target:  5'- cGAACCUGgCUGACUUUUCa------ -3'
miRNA:   3'- aUUUGGACaGACUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 55411 0.67 0.999802
Target:  5'- aUGAACUUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 55475 0.67 0.999802
Target:  5'- aUAAAUCUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 55443 0.67 0.999802
Target:  5'- aUAAAUCUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132969 0.67 0.999802
Target:  5'- aUGAACUUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 55128 0.67 0.999802
Target:  5'- aUGAACUUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 97820 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 97764 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 97707 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacagGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 55787 0.67 0.999745
Target:  5'- uUGAACUUGUCUGACgUUUCGcuaacaUGuUCUg -3'
miRNA:   3'- -AUUUGGACAGACUGaAAAGC------AC-AGAg -5'
11673 3' -46.1 NC_003102.1 + 97877 0.68 0.999181
Target:  5'- -cAACUUGUCUGACUUUUCaUGa--- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGcACagag -5'
11673 3' -46.1 NC_003102.1 + 137057 0.68 0.998987
Target:  5'- uUGAACCUGUCgGACUUUUCa------ -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 67174 0.68 0.998987
Target:  5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUa- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGC------ACAGag -5'
11673 3' -46.1 NC_003102.1 + 42761 0.68 0.998755
Target:  5'- uUGAACgC-GUCUGACUUUUCGaUGUUa- -3'
miRNA:   3'- -AUUUG-GaCAGACUGAAAAGC-ACAGag -5'
11673 3' -46.1 NC_003102.1 + 67399 0.68 0.998987
Target:  5'- cGAACCUGgCcGACUUUUCGUaauaaGUCaUCg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCA-----CAG-AG- -5'
11673 3' -46.1 NC_003102.1 + 103612 0.69 0.998154
Target:  5'- -uAACgUGUCUGACUUUUCGacGUUa- -3'
miRNA:   3'- auUUGgACAGACUGAAAAGCa-CAGag -5'
11673 3' -46.1 NC_003102.1 + 67076 0.69 0.998154
Target:  5'- cAAACgUGUCUGACUUUUUGcaaacaUGUUUa -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGC------ACAGAg -5'
11673 3' -46.1 NC_003102.1 + 67264 0.7 0.996206
Target:  5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUUa -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGC------ACAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.