miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 67264 0.7 0.996206
Target:  5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUUa -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGC------ACAGAg -5'
11673 3' -46.1 NC_003102.1 + 66979 0.75 0.926334
Target:  5'- cAAACgUGUCUGACUUUUCGUuaacuaCUCu -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCAca----GAG- -5'
11673 3' -46.1 NC_003102.1 + 26191 0.75 0.932028
Target:  5'- uUGAACgUGUCUGACUUUUCGUuaacauGUUUg -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCA------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 36096 0.72 0.981515
Target:  5'- cGAACCUGUCUGACUUUUUa------ -3'
miRNA:   3'- aUUUGGACAGACUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 10682 0.72 0.983656
Target:  5'- cAAACUUGUCUGACUUUUCaugaacUGUUUa -3'
miRNA:   3'- aUUUGGACAGACUGAAAAGc-----ACAGAg -5'
11673 3' -46.1 NC_003102.1 + 55319 0.71 0.990395
Target:  5'- aUAAACUUGUUgGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132090 0.71 0.990395
Target:  5'- aUAAACUUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 25914 0.7 0.99282
Target:  5'- cUGAACgUGUCUGACUUUUUGUa---- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 132669 0.7 0.995517
Target:  5'- aUGAACCUGUUauACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGacUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 10516 0.75 0.920354
Target:  5'- uUGAACgUGUCUGACUUUUCGUa---- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 132780 0.77 0.862517
Target:  5'- aUGAACCUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132701 0.77 0.862517
Target:  5'- aUGAACCUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 10599 0.83 0.571536
Target:  5'- cGAACgUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 121680 0.83 0.571536
Target:  5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 10441 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 25974 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 26057 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 26578 0.81 0.671778
Target:  5'- cGAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 103479 0.79 0.789048
Target:  5'- cGAACCUGgCcGACUUUUCGUG-CUCa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 26132 0.78 0.836575
Target:  5'- uUGAACgUGUCUGACUUUUCGUuaacauGUCg- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCA------CAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.