miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 89642 1.1 0.018269
Target:  5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3'
miRNA:   3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5'
11673 3' -46.1 NC_003102.1 + 112652 0.9 0.267287
Target:  5'- cGAACCUGUCUGACUUUUCGUGa--- -3'
miRNA:   3'- aUUUGGACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 112702 0.86 0.444908
Target:  5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5'
11673 3' -46.1 NC_003102.1 + 137296 0.85 0.485561
Target:  5'- cAAACgUGUCUGACUUUUCGUGgacaugucUCUCg -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCAC--------AGAG- -5'
11673 3' -46.1 NC_003102.1 + 121680 0.83 0.571536
Target:  5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 10599 0.83 0.571536
Target:  5'- cGAACgUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 25974 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 10441 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 26057 0.82 0.604824
Target:  5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 26578 0.81 0.671778
Target:  5'- cGAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 104483 0.81 0.671778
Target:  5'- cGAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 137449 0.8 0.715783
Target:  5'- cAAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 42728 0.8 0.715783
Target:  5'- -cAACUUGUCUGACUUUUCGUGa--- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 137372 0.8 0.715783
Target:  5'- cAAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 103479 0.79 0.789048
Target:  5'- cGAACCUGgCcGACUUUUCGUG-CUCa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 89574 0.78 0.798935
Target:  5'- uUGAACgUGUCUGACUUUUCaUGUUUUa -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGcACAGAG- -5'
11673 3' -46.1 NC_003102.1 + 26132 0.78 0.836575
Target:  5'- uUGAACgUGUCUGACUUUUCGUuaacauGUCg- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCA------CAGag -5'
11673 3' -46.1 NC_003102.1 + 26268 0.77 0.845456
Target:  5'- cGAACCUGgCcGACUUUUCGUGUUUa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACAGAg -5'
11673 3' -46.1 NC_003102.1 + 103732 0.77 0.854106
Target:  5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5'
11673 3' -46.1 NC_003102.1 + 132701 0.77 0.862517
Target:  5'- aUGAACCUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.