Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 3' | -46.1 | NC_003102.1 | + | 89642 | 1.1 | 0.018269 |
Target: 5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3' miRNA: 3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112652 | 0.9 | 0.267287 |
Target: 5'- cGAACCUGUCUGACUUUUCGUGa--- -3' miRNA: 3'- aUUUGGACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112702 | 0.86 | 0.444908 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137296 | 0.85 | 0.485561 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGgacaugucUCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCAC--------AGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 121680 | 0.83 | 0.571536 |
Target: 5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10599 | 0.83 | 0.571536 |
Target: 5'- cGAACgUGUCUGACUUUUCGUaGUCg- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 25974 | 0.82 | 0.604824 |
Target: 5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10441 | 0.82 | 0.604824 |
Target: 5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26057 | 0.82 | 0.604824 |
Target: 5'- -uAACUUGUCUGACUUUUCGUaGUCg- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26578 | 0.81 | 0.671778 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 104483 | 0.81 | 0.671778 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137449 | 0.8 | 0.715783 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 42728 | 0.8 | 0.715783 |
Target: 5'- -cAACUUGUCUGACUUUUCGUGa--- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137372 | 0.8 | 0.715783 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103479 | 0.79 | 0.789048 |
Target: 5'- cGAACCUGgCcGACUUUUCGUG-CUCa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 89574 | 0.78 | 0.798935 |
Target: 5'- uUGAACgUGUCUGACUUUUCaUGUUUUa -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGcACAGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26132 | 0.78 | 0.836575 |
Target: 5'- uUGAACgUGUCUGACUUUUCGUuaacauGUCg- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCA------CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26268 | 0.77 | 0.845456 |
Target: 5'- cGAACCUGgCcGACUUUUCGUGUUUa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103732 | 0.77 | 0.854106 |
Target: 5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 132701 | 0.77 | 0.862517 |
Target: 5'- aUGAACCUGUUaGACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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