miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 121814 0.66 0.999884
Target:  5'- cGAACCUGgCcGACUUUUCGauaaGUCaUCg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCa---CAG-AG- -5'
11673 3' -46.1 NC_003102.1 + 103732 0.77 0.854106
Target:  5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5'
11673 3' -46.1 NC_003102.1 + 26268 0.77 0.845456
Target:  5'- cGAACCUGgCcGACUUUUCGUGUUUa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACAGAg -5'
11673 3' -46.1 NC_003102.1 + 89642 1.1 0.018269
Target:  5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3'
miRNA:   3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5'
11673 3' -46.1 NC_003102.1 + 112786 0.7 0.996206
Target:  5'- cGAACgUGUCUGACUUUuuauagUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAA------AGCACagag -5'
11673 3' -46.1 NC_003102.1 + 10815 0.7 0.995517
Target:  5'- -uAACCUGgCcGACUUUUCGUG-CUUa -3'
miRNA:   3'- auUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 104649 0.71 0.988963
Target:  5'- cGAACgUGUCaGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 19451 0.71 0.987369
Target:  5'- -uAGCCUGUCUGAuCUcgUCGaGUCUg -3'
miRNA:   3'- auUUGGACAGACU-GAaaAGCaCAGAg -5'
11673 3' -46.1 NC_003102.1 + 10733 0.72 0.97917
Target:  5'- cGAACCUGgCcGACUUUUCGUG-CUg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAg -5'
11673 3' -46.1 NC_003102.1 + 56128 0.75 0.920354
Target:  5'- uUGAACgUGUCUGACUUUUCGUa---- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 26191 0.74 0.94741
Target:  5'- cGAACCUGgCcGACUUUUCGUG-CUUa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 25969 0.72 0.981515
Target:  5'- cGAACCUGgCcGACUUUUCGUGaUCa- -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCAC-AGag -5'
11673 3' -46.1 NC_003102.1 + 67399 0.68 0.998987
Target:  5'- cGAACCUGgCcGACUUUUCGUaauaaGUCaUCg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCA-----CAG-AG- -5'
11673 3' -46.1 NC_003102.1 + 26108 0.74 0.94741
Target:  5'- cGAACCUGgCcGACUUUUUGUG-CUCa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 103612 0.69 0.998154
Target:  5'- -uAACgUGUCUGACUUUUCGacGUUa- -3'
miRNA:   3'- auUUGgACAGACUGAAAAGCa-CAGag -5'
11673 3' -46.1 NC_003102.1 + 103673 0.71 0.987369
Target:  5'- uUGAACgUGUCUGACUUUUCGcGg--- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCaCagag -5'
11673 3' -46.1 NC_003102.1 + 56220 0.75 0.926334
Target:  5'- cUGAACgUGUCUGACUUUUCGUa---- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 10651 0.77 0.878587
Target:  5'- cAAACCUGgCcGACUUUUCGUGUUUa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACAGAg -5'
11673 3' -46.1 NC_003102.1 + 10575 0.7 0.996206
Target:  5'- cGAACCUGgCcGACUUUUCGUGa--- -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 26049 0.71 0.988963
Target:  5'- cAAACCUGgCcGACUUUUCGUGaUCa- -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCAC-AGag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.