Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 3' | -46.1 | NC_003102.1 | + | 121814 | 0.66 | 0.999884 |
Target: 5'- cGAACCUGgCcGACUUUUCGauaaGUCaUCg -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCa---CAG-AG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103732 | 0.77 | 0.854106 |
Target: 5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26268 | 0.77 | 0.845456 |
Target: 5'- cGAACCUGgCcGACUUUUCGUGUUUa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 89642 | 1.1 | 0.018269 |
Target: 5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3' miRNA: 3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112786 | 0.7 | 0.996206 |
Target: 5'- cGAACgUGUCUGACUUUuuauagUCGUGg--- -3' miRNA: 3'- aUUUGgACAGACUGAAA------AGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10815 | 0.7 | 0.995517 |
Target: 5'- -uAACCUGgCcGACUUUUCGUG-CUUa -3' miRNA: 3'- auUUGGACaGaCUGAAAAGCACaGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 104649 | 0.71 | 0.988963 |
Target: 5'- cGAACgUGUCaGACUUUUCGUGg--- -3' miRNA: 3'- aUUUGgACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 19451 | 0.71 | 0.987369 |
Target: 5'- -uAGCCUGUCUGAuCUcgUCGaGUCUg -3' miRNA: 3'- auUUGGACAGACU-GAaaAGCaCAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10733 | 0.72 | 0.97917 |
Target: 5'- cGAACCUGgCcGACUUUUCGUG-CUg -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACaGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 56128 | 0.75 | 0.920354 |
Target: 5'- uUGAACgUGUCUGACUUUUCGUa---- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCAcagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26191 | 0.74 | 0.94741 |
Target: 5'- cGAACCUGgCcGACUUUUCGUG-CUUa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 25969 | 0.72 | 0.981515 |
Target: 5'- cGAACCUGgCcGACUUUUCGUGaUCa- -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCAC-AGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 67399 | 0.68 | 0.998987 |
Target: 5'- cGAACCUGgCcGACUUUUCGUaauaaGUCaUCg -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCA-----CAG-AG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26108 | 0.74 | 0.94741 |
Target: 5'- cGAACCUGgCcGACUUUUUGUG-CUCa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103612 | 0.69 | 0.998154 |
Target: 5'- -uAACgUGUCUGACUUUUCGacGUUa- -3' miRNA: 3'- auUUGgACAGACUGAAAAGCa-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 103673 | 0.71 | 0.987369 |
Target: 5'- uUGAACgUGUCUGACUUUUCGcGg--- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCaCagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 56220 | 0.75 | 0.926334 |
Target: 5'- cUGAACgUGUCUGACUUUUCGUa---- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCAcagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10651 | 0.77 | 0.878587 |
Target: 5'- cAAACCUGgCcGACUUUUCGUGUUUa -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 10575 | 0.7 | 0.996206 |
Target: 5'- cGAACCUGgCcGACUUUUCGUGa--- -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 26049 | 0.71 | 0.988963 |
Target: 5'- cAAACCUGgCcGACUUUUCGUGaUCa- -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCAC-AGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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