miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 89642 1.1 0.018269
Target:  5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3'
miRNA:   3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5'
11673 3' -46.1 NC_003102.1 + 26268 0.77 0.845456
Target:  5'- cGAACCUGgCcGACUUUUCGUGUUUa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACAGAg -5'
11673 3' -46.1 NC_003102.1 + 137449 0.8 0.715783
Target:  5'- cAAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 26049 0.71 0.988963
Target:  5'- cAAACCUGgCcGACUUUUCGUGaUCa- -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCAC-AGag -5'
11673 3' -46.1 NC_003102.1 + 112702 0.86 0.444908
Target:  5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5'
11673 3' -46.1 NC_003102.1 + 10815 0.7 0.995517
Target:  5'- -uAACCUGgCcGACUUUUCGUG-CUUa -3'
miRNA:   3'- auUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 112786 0.7 0.996206
Target:  5'- cGAACgUGUCUGACUUUuuauagUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAA------AGCACagag -5'
11673 3' -46.1 NC_003102.1 + 89574 0.78 0.798935
Target:  5'- uUGAACgUGUCUGACUUUUCaUGUUUUa -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGcACAGAG- -5'
11673 3' -46.1 NC_003102.1 + 26578 0.81 0.671778
Target:  5'- cGAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 97820 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 97764 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 36096 0.72 0.981515
Target:  5'- cGAACCUGUCUGACUUUUUa------ -3'
miRNA:   3'- aUUUGGACAGACUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 26191 0.75 0.932028
Target:  5'- uUGAACgUGUCUGACUUUUCGUuaacauGUUUg -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCA------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 66979 0.75 0.926334
Target:  5'- cAAACgUGUCUGACUUUUCGUuaacuaCUCu -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCAca----GAG- -5'
11673 3' -46.1 NC_003102.1 + 10516 0.75 0.920354
Target:  5'- uUGAACgUGUCUGACUUUUCGUa---- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 67174 0.68 0.998987
Target:  5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUa- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGC------ACAGag -5'
11673 3' -46.1 NC_003102.1 + 137057 0.68 0.998987
Target:  5'- uUGAACCUGUCgGACUUUUCa------ -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 97877 0.68 0.999181
Target:  5'- -cAACUUGUCUGACUUUUCaUGa--- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGcACagag -5'
11673 3' -46.1 NC_003102.1 + 55787 0.67 0.999745
Target:  5'- uUGAACUUGUCUGACgUUUCGcuaacaUGuUCUg -3'
miRNA:   3'- -AUUUGGACAGACUGaAAAGC------AC-AGAg -5'
11673 3' -46.1 NC_003102.1 + 97707 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacagGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.