miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 89606 1.07 0.065667
Target:  5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 104602 0.92 0.376017
Target:  5'- aUAAAGUUUAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76445 0.92 0.385142
Target:  5'- gUAAAGUUUAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103627 0.87 0.604609
Target:  5'- ---uGUUcACGAAAAGUCGGACGCGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 25998 0.86 0.638531
Target:  5'- ---uGUUUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 56055 0.85 0.716928
Target:  5'- ---uGUUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54624 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36181 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97730 0.82 0.829701
Target:  5'- -cAGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97843 0.82 0.838862
Target:  5'- -cGGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112932 0.82 0.847794
Target:  5'- cAAAGUUUACGAAAAGUUGGcCAgGUu -3'
miRNA:   3'- aUUUCAAAUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67144 0.78 0.944742
Target:  5'- --uAGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuUCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97677 0.78 0.954016
Target:  5'- ---cGUUcACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 55965 0.77 0.969274
Target:  5'- -----gUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 10680 0.77 0.975366
Target:  5'- ---uGUcUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26356 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26297 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 121720 0.75 0.989882
Target:  5'- uUAAAGUgguuuaagUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAa-------AUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10759 0.75 0.991234
Target:  5'- ------cUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 121840 0.75 0.991234
Target:  5'- ------cUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaaAUGCUUUUCAGcCUGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.