miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 76518 0.74 0.9948
Target:  5'- uUAAAaUUUACGAAAAGUCGGccagguucgauuugaACGCGUc -3'
miRNA:   3'- -AUUUcAAAUGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103568 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 104320 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 118014 0.73 0.997191
Target:  5'- gAAAGUggAC---AAGUCGGACACGa -3'
miRNA:   3'- aUUUCAaaUGcuuUUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 26741 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112539 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103509 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112438 0.73 0.998065
Target:  5'- ---cGUUUcguaACuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAA----UGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 132237 0.72 0.998408
Target:  5'- -cAAGUUUAUGAacauguuuuuaaAAAGUCGGcCGCGUu -3'
miRNA:   3'- auUUCAAAUGCU------------UUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137325 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137401 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137132 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54289 0.72 0.998408
Target:  5'- ------aUGC-AAAAGUCGGACACGUu -3'
miRNA:   3'- auuucaaAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137209 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137286 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67240 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 104490 0.71 0.999569
Target:  5'- -------cACGAAAAGUCuGACACGUu -3'
miRNA:   3'- auuucaaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67428 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67237 0.71 0.999736
Target:  5'- -----aUUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGCCuGUgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.