miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 76445 0.92 0.385142
Target:  5'- gUAAAGUUUAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103627 0.87 0.604609
Target:  5'- ---uGUUcACGAAAAGUCGGACGCGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 56055 0.85 0.716928
Target:  5'- ---uGUUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36181 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97730 0.82 0.829701
Target:  5'- -cAGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97843 0.82 0.838862
Target:  5'- -cGGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97677 0.78 0.954016
Target:  5'- ---cGUUcACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 55965 0.77 0.969274
Target:  5'- -----gUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54289 0.72 0.998408
Target:  5'- ------aUGC-AAAAGUCGGACACGUu -3'
miRNA:   3'- auuucaaAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112438 0.73 0.998065
Target:  5'- ---cGUUUcguaACuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAA----UGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112539 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 104320 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103568 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103509 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 121720 0.75 0.989882
Target:  5'- uUAAAGUgguuuaagUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAa-------AUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 89606 1.07 0.065667
Target:  5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112731 0.66 1
Target:  5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 42615 0.66 1
Target:  5'- ---uGUUcAUGAAAAGUUGGACAaGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26924 0.66 1
Target:  5'- ---uGUUUACGAAAAGUC--AUACGg -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 61768 0.67 0.999999
Target:  5'- -uAAGUUugauucggucagacUACGAAaacguucaGAGaUCGGACACGUc -3'
miRNA:   3'- auUUCAA--------------AUGCUU--------UUC-AGCCUGUGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.