miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 31243 0.69 0.999981
Target:  5'- ------cUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- auuucaaAUGCUU------UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 26356 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137325 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89422 0.68 0.999986
Target:  5'- ---uGUcUAUGAAAAGUCaGACAUGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26297 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26520 0.68 0.999993
Target:  5'- --------uCGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112815 0.67 0.999997
Target:  5'- ---uGUUcACGAAAAGUCaGACAgGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 137401 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54624 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 121923 0.7 0.999881
Target:  5'- ---cGUUUAUGAAAAGUCaaACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89513 0.69 0.999974
Target:  5'- ---uGUUUGacaAAAAGUUGGACGCGUu -3'
miRNA:   3'- auuuCAAAUgc-UUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76518 0.74 0.9948
Target:  5'- uUAAAaUUUACGAAAAGUCGGccagguucgauuugaACGCGUc -3'
miRNA:   3'- -AUUUcAAAUGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 10680 0.77 0.975366
Target:  5'- ---uGUcUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112438 0.73 0.998065
Target:  5'- ---cGUUUcguaACuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAA----UGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112539 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89405 0.68 0.999986
Target:  5'- ---uGUUUaaaacAUGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAA-----UGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97843 0.82 0.838862
Target:  5'- -cGGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 10561 0.69 0.999974
Target:  5'- aAAAGUgauucagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- aUUUCAaa------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10404 0.69 0.999981
Target:  5'- -uAAGUUggccucACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auUUCAAa-----UGCUUUUCAGCCuGUgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.